View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7494_high_23 (Length: 404)
Name: NF7494_high_23
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 38091710 - 38092100
Alignment:
| Q |
1 |
cttgcatctgagactagtataatggcagaatacaggcagccatcaaagggtgtatcattataggaggtatctagaagcatgttaatatcatggaaaacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38091710 |
cttgcatctgagactagtataatggcagaatacaggcagccatcaaagggtgtatcattataggaggtatctagaagcatgttaatatcatggaaaacta |
38091809 |
T |
|
| Q |
101 |
gttcagacccagattgaacattgaagtatgtcataatatttgattggttagaagttagtacattatacattctcaaattgtatcttccctgctttgaggg |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38091810 |
gttcagacccagattgaacattaaagtatgtcagaatatttgattggttagaagttagtacattatacattctcaaattgtatcttccctgctttgaggg |
38091909 |
T |
|
| Q |
201 |
acttagttcatctgagttgtaagctgagatggccaatgatgtatagattaagaatttggtgttgtaggcttgtagctaatgccattaggctgtagattga |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38091910 |
acttagttcatctgagttgtaagttgagatggccaatgatgtatagattaagaatttggtgttgtaggcttgtagctaatgccattaggctgtagattga |
38092009 |
T |
|
| Q |
301 |
tactttaagcaagatgatattctaatataatttattgaaagttttagaaaacttgtttagtttgttttgactaaaacatgtatgctgatgt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38092010 |
tactttaagcaagatgatattctaatataatttattgaaagttttagaaaacttgtttagtttgttttgactaaaacatgtatgctcatgt |
38092100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University