View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_27 (Length: 382)
Name: NF7494_high_27
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_27 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 199 - 376
Target Start/End: Complemental strand, 5982763 - 5982586
Alignment:
| Q |
199 |
aaatttcagattagccttttgactttctgtcaaaaactatattatcataattcagaacccaaatatcaataacaaaataagaacttaaacaaacaaacat |
298 |
Q |
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| T |
5982763 |
aaatttcagattagccttttgacattctgtcaaaaactatattatcataattcagaacccaaatatcaataacaaaataagaacttaatcaaacaaacat |
5982664 |
T |
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| Q |
299 |
agaaatattgagttcaagaaatcttacaaaaatgcaactgaaaaacaaaacaaaggcatgataatttgaagcaagaga |
376 |
Q |
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| T |
5982663 |
agaaatattgagttcaagaaatcttacgaaaatgaaactgaaaaacaaaacaaaggcatgataatttgaagcaagaga |
5982586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 5982955 - 5982807
Alignment:
| Q |
12 |
gaaaatgaagctccattaaattcatgataatcaacatttgtttcttgtgccttaggtaacaaaggtacatttccat---ccacttccttcttcttccttg |
108 |
Q |
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| T |
5982955 |
gaaaatgaagctctattaaattcatgataatcaacatttgtttcttgtgccttaggtaacaaaggtacatttccatcaaccacttccttcttcttccttg |
5982856 |
T |
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| Q |
109 |
ttttcctattctctacaagagtttcaattgtcattttcagctttcaagt |
157 |
Q |
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| T |
5982855 |
ttttcctattctctacaagagtttcaattgtcattttcagctttcaagt |
5982807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 242 - 348
Target Start/End: Complemental strand, 5961300 - 5961194
Alignment:
| Q |
242 |
atcataattcagaacccaaatatcaataacaaaataagaacttaaacaaacaaacatagaaatattgagttcaagaaatcttacaaaaatgcaactgaaa |
341 |
Q |
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| T |
5961300 |
atcataattcagaaccgaaatatcaatagcaaaataagcacttaatcaaacaaattcagagatattgagttcaagaaatcttacaaaaatgcaaccaaaa |
5961201 |
T |
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| Q |
342 |
aacaaaa |
348 |
Q |
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||||||| |
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| T |
5961200 |
aacaaaa |
5961194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 157
Target Start/End: Complemental strand, 5932646 - 5932503
Alignment:
| Q |
11 |
agaaaatgaagctccattaaattcatgataatcaacatttgtttcttgtgccttaggtaacaaaggtacatttccatccac---ttccttcttcttcctt |
107 |
Q |
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||||||||||||||||||||||||||| | || || ||||||| | ||||||||||||||| ||||| |||| || |||||| ||||||||| |
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| T |
5932646 |
agaaaatgaagctccattaaattcatgtaactcggtatcgctttcttgagacttaggtaacaaaggcacattctcatcaacaacttccttgttcttcctt |
5932547 |
T |
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| Q |
108 |
gttttcctattctctacaagagtttcaattgtcattttcagctttcaagt |
157 |
Q |
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| T |
5932546 |
gttttcttcttctc------agtttcaattgtcattttcagctttcaagt |
5932503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 5967042 - 5966965
Alignment:
| Q |
11 |
agaaaatgaagctccattaaattcatgataatcaacatttgtttcttgtgccttaggtaacaaaggtacatttccatc |
88 |
Q |
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|||||||||||||||||||||||||| | | | ||||| |||| |||| |||||||||||||||| ||||| |||| |
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| T |
5967042 |
agaaaatgaagctccattaaattcatcaaacttaacatcactttcctgtgtcttaggtaacaaaggtgcatttacatc |
5966965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 5961529 - 5961432
Alignment:
| Q |
14 |
aaatgaagctccattaaattcatgataatcaacatttgtttcttgtgccttaggtaacaaaggtacatttccat---ccacttccttcttcttccttg |
108 |
Q |
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| T |
5961529 |
aaatgaagctccattgaattcatgaaactcagcatctgtttcttgacacataggtaacaaaggtgcattttcatcaacaacttcctttttcttccttg |
5961432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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