View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_3 (Length: 867)
Name: NF7494_high_3
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 392 - 850
Target Start/End: Complemental strand, 31509884 - 31509422
Alignment:
| Q |
392 |
tcaatttaagaaacttaagtaacaaacaaattgtacaaatgcatcaataacaataagtacaaaatcatgtgtaatctgacaatctgtacatttggaaaat |
491 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31509884 |
tcaatttaagaaacttaagtaacaaacaaattgtacaaatgcatcaataacaataagtacaaaatcatgtgtaatctgacaatctgtacatttggaaaat |
31509785 |
T |
|
| Q |
492 |
atcatccctataatatgaattcataatccatattaa----ggagaaataatatttaaaaaagacacacgagtattaatcaatctcttaaacaaacattct |
587 |
Q |
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| T |
31509784 |
gtcatccctataatatgatttcataatccatattaattaaggagaaataatatttaaaaaagacacacgagtattaatcaatctcttaaacaaacattct |
31509685 |
T |
|
| Q |
588 |
aatccattttcaattccttcaatagccaccaccaaagcttctaatcttcgatgtgcagattgaatcttctcagcctcattctccataatcatcaaactac |
687 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31509684 |
aatccattttcaattccttcaatagccaccaccaaagcttctaatcttccatgtgcagattgaatcttctcagcctcattttccataatcatcaaactac |
31509585 |
T |
|
| Q |
688 |
taactccaaaatccactttttccaactcattaatattctcattttgattatcacaaccaaacacacccttctgcatcaaccttgaaaccaatgaccattt |
787 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31509584 |
taactccaaaatccactttttccaactcattaatattctcattttgattatcacaaccaaacacacccttctgcatcaaccttgaaaccaatgaccattt |
31509485 |
T |
|
| Q |
788 |
attaacctttgatctcaaaattggtgaagaaagaaacacaacaagtgattgaaggattgaact |
850 |
Q |
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| T |
31509484 |
attaacctttgatctcaaaattggtgaagaaagaaacacaacaagtgattgaaggattgaact |
31509422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 31510238 - 31509925
Alignment:
| Q |
1 |
cccaacaaatattaacagatgtatttataaagcactcatcaaatgaatcctcacattgacatgagagaaaattgaatcaacgaacttacagctgagttaa |
100 |
Q |
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||||||||||||||||||| ||||||| ||| |||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
31510238 |
cccaacaaatattaacagaggtatttacaaaacactcaccaaataaatcctcacattgacatgaaagaaagttgaatcaacgaacttacagctgagttaa |
31510139 |
T |
|
| Q |
101 |
catcttactaaccgagttaaccatcattgattaaaaaataaattatctcttgctttaattgaaatcaattcatcacataattttgtcctattcaatcaca |
200 |
Q |
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| T |
31510138 |
catcttattaaccgagttaaccttcattgattaaaaaataaattatctcttgctttaattgaaatcaattcatcacataattttgtcctattcaatcaca |
31510039 |
T |
|
| Q |
201 |
gaatgttcaacgcccttgctttccttaaacaacctcaattttatatgcctcccttcaacaagaggttatagtattctatgcttttgaaaacaaaagatgt |
300 |
Q |
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| T |
31510038 |
gaatgttcaacgcccttgctttccttaaacaacctcaattttatatgcctcccttcaacaagaggttatagtattctatgcttttgaaaacaaaagatgt |
31509939 |
T |
|
| Q |
301 |
tgagtataattggt |
314 |
Q |
| |
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|||||||||||||| |
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| T |
31509938 |
tgagtataattggt |
31509925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 338 - 368
Target Start/End: Complemental strand, 31509901 - 31509871
Alignment:
| Q |
338 |
tagggaggtacaaaacttcaatttaagaaac |
368 |
Q |
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| T |
31509901 |
tagggaggtacaaaacttcaatttaagaaac |
31509871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 528 - 610
Target Start/End: Original strand, 9277754 - 9277836
Alignment:
| Q |
528 |
ggagaaataatatttaaaaaagacacacgagtattaatcaatctcttaaacaaacattctaatccattttcaattccttcaat |
610 |
Q |
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||||||| |||||| | ||||||||||||||||||||| | |||||||||||| || ||||||||||||| |||||||| |
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| T |
9277754 |
ggagaaagaatattaagaaaagacacacgagtattaataaggtgcttaaacaaacaatccaatccattttcaaacccttcaat |
9277836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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