View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_39 (Length: 303)
Name: NF7494_high_39
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 11603673 - 11603397
Alignment:
| Q |
10 |
aataatatagaccttgaatgtatcaaaattataaaagtatcccggagtctttctttttgacgtgtttttcattgggcagtttggtccacaaacatgtctt |
109 |
Q |
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| T |
11603673 |
aataatatagaccttgaatgtatcaaaattataaaagtatcctgaagtctttctttttgacgtgtttttcattggccagtttggtccacaaacatgtctt |
11603574 |
T |
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| Q |
110 |
ctgttagtcagtttagtccatgatattactagcaaaagacacattcatggatgtttttgtaatttcagtatattttgattgtaataacatcgcatcatac |
209 |
Q |
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| T |
11603573 |
ctgttagtcagtttagtccatgatattactagcaaaagacacactcatggatatttttgtaatttcagtatattttgattgtaataacatcgcatcatac |
11603474 |
T |
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| Q |
210 |
ataaatatgaacaaaaatgacaatttagtctgatcaaatgtgtctcactctcatgtgacctcaaccacagttgcttt |
286 |
Q |
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| T |
11603473 |
ataaatatgaaccaaaatgacaatttagtctgatcaaacgtgtctcactctcatgtgacctcaaccacagttgcttt |
11603397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 107560 - 107495
Alignment:
| Q |
87 |
agtttggtccacaaacatgtcttctgttagtcagtttagtccatgatattactagcaaaagacaca |
152 |
Q |
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| T |
107560 |
agtttggtcaccaaatgtgtcttttgttagtcattttagtccataaaattactaacaaaagacaca |
107495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 5711233 - 5711169
Alignment:
| Q |
112 |
gttagtcagtttagtccatgatattactagcaaaagacacattcatggatgtttttgtaatttca |
176 |
Q |
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| T |
5711233 |
gttagtcagtttagtctatgaaaatactaacaaaagtcacactcatggatgtttttgcaatttca |
5711169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 29931076 - 29931114
Alignment:
| Q |
87 |
agtttggtccacaaacatgtcttctgttagtcagtttag |
125 |
Q |
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| T |
29931076 |
agtttggtccacaaatatgtcttttgttagtcagtttag |
29931114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 14012732 - 14012643
Alignment:
| Q |
87 |
agtttggtccacaaacatgtcttctgttagtcagtttagtccatgatattactagcaaaagacacattcatggatgtttttgtaatttca |
176 |
Q |
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|||||||||| |||| || |||| ||||||||||||||||||| || |||||| |||| | ||| | | ||||||||||||| ||||| |
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| T |
14012732 |
agtttggtcctcaaatatctcttttgttagtcagtttagtccaagaagttactaaaaaaatatacactgagggatgtttttgtattttca |
14012643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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