View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7494_high_4 (Length: 861)
Name: NF7494_high_4
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_4 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 431 - 845
Target Start/End: Complemental strand, 42264950 - 42264536
Alignment:
| Q |
431 |
caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtatgagatcttttagaggaattaagagtcacaaatacatttctcatga |
530 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42264950 |
caacttactgtgatgcaaaagacttgacctcgtcattattcagaatctgatgtatgagatcttttagaggaattaagagtcacaaatacatttctcatga |
42264851 |
T |
|
| Q |
531 |
agttttatgactacctatgtgaaaaggagcacaaaaaacgtaagctttttgacgtacctccttatatgagaggagaatctctccttaaaatgatgactaa |
630 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42264850 |
agttttatgactacctatgtgaaaaggagcacaaaaatcgtaagctttttgacgtacctccttatatgagaggagaatctctccttaaaatgatgactaa |
42264751 |
T |
|
| Q |
631 |
tgctggtttgtttcgagtaagagcaatgcaatgtcacatttttatgaattattaactaacaatcttataacgggtctgattagtttcaaatattaactaa |
730 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42264750 |
tgctggtttgtttcgagtaagagcaatgcaatgtcacatttttatgaattattaactaacaatcttataacgggtctgattagtttcaaatattaactaa |
42264651 |
T |
|
| Q |
731 |
catattacgagtttatgaattgttacattgtgtggtgctgtgtttctaacatttaaggaaaggcctaaaaattaatggatgcagaatttttatttgataa |
830 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42264650 |
catattacgagtttatgaattgttacattgtgtggtgctgtgtttctaacatttaaggaaaggcctaaaaattaatggatgcagaatttttctttgataa |
42264551 |
T |
|
| Q |
831 |
attaaggaagcattt |
845 |
Q |
| |
|
||||||||||||||| |
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|
| T |
42264550 |
attaaggaagcattt |
42264536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 361
Target Start/End: Complemental strand, 42265360 - 42265020
Alignment:
| Q |
16 |
atcaaaccaaaacaaattgaagaccaatgtgaaccaaagcgaaaccaccaaaaagaacataaccaaactaatccaagtgaaataggagaaacataacaac |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42265360 |
atcaaaccaaaacaaattgaagaccaatgtgaaccaaagcgaaaccaccaaaaagaacataaccaaactaatccaagtgaaataggagaaacataacaat |
42265261 |
T |
|
| Q |
116 |
cagagacgaacaaaattaacaagaggcacaagacactcaatcaaagcggatcaaaccatgctcttgataccatgttaaccatctacagtttcaatataat |
215 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
42265260 |
cagagacgaacaaaattaacaagagacacgagacactgaatcaaagcggatcaaaccatgct--------catgttaaccatctacggtttcaatataat |
42265169 |
T |
|
| Q |
216 |
aataaaggagctggctagggtttcataagaatgacaatggcattgcataatattga----atacaagcgaatatcataaccgcagtaacctattatctca |
311 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| | |
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|
| T |
42265168 |
aataaaggagccggctagggtttcataagaatgacaatggcattgcataatattgaatatatacaagcaaatatcataaccgcagtaacctattatct-a |
42265070 |
T |
|
| Q |
312 |
aacttccccttaaactcatgatccaataacactaggcatcaagagtttgt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42265069 |
aacttccccttaaactcatgatccaataacactaggcatcaagagtttgt |
42265020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 431 - 625
Target Start/End: Original strand, 12861010 - 12861204
Alignment:
| Q |
431 |
caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtatgagatcttttagaggaattaagagtcacaaatacatttctcatga |
530 |
Q |
| |
|
||||||||||| |||||| | |||||||||||||||||||| ||||||||||| || || |||||||| ||||| ||||| || | || ||||| |
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|
| T |
12861010 |
caacttactgtcatgcaacaaactcgacctcgtcattattctgaatctgatgtctgggaacttttagatgaattgagagtgtttgatgattatcgcatga |
12861109 |
T |
|
| Q |
531 |
agttttatgactacctatgtgaaaaggagcacaaaaaacgtaagctttttgacgtacctccttatatgagaggagaatctctccttaaaatgatg |
625 |
Q |
| |
|
|||||||||| | | ||||| || ||||||||||||||||| |||||| ||||||| | ||||||||| ||| ||||| ||||||||||| |
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|
| T |
12861110 |
agttttatgatcatttgtgtgataatcagcacaaaaaacgtaagatttttggagtacctcatcatatgagagttgaagctctctttaaaatgatg |
12861204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 431 - 640
Target Start/End: Original strand, 15966631 - 15966840
Alignment:
| Q |
431 |
caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtatgagatcttttagaggaattaagagtcacaaatacatttctcatga |
530 |
Q |
| |
|
||||||| ||| |||||| | || | ||||| ||||||||| ||||||||||| || || |||||||| ||||| ||||| || | || ||||| |
|
|
| T |
15966631 |
caacttattgtcatgcaacaaacccaacctcatcattattctgaatctgatgtctgggaacttttagatgaattgagagtgtttgatgattatcgcatga |
15966730 |
T |
|
| Q |
531 |
agttttatgactacctatgtgaaaaggagcacaaaaaacgtaagctttttgacgtacctccttatatgagaggagaatctctccttaaaatgatgactaa |
630 |
Q |
| |
|
|||||||| | | | ||||| || |||||||||||||||||| ||||||| ||||||| | ||||||||| ||| ||||| |||||||||||| | | |
|
|
| T |
15966731 |
agttttataatcatttgtgtgataatgagcacaaaaaacgtaagatttttgaggtacctcgtcatatgagagctgaagctctctttaaaatgatgaatga |
15966830 |
T |
|
| Q |
631 |
tgctggtttg |
640 |
Q |
| |
|
|||||||||| |
|
|
| T |
15966831 |
tgctggtttg |
15966840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 431 - 640
Target Start/End: Original strand, 16653697 - 16653906
Alignment:
| Q |
431 |
caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtatgagatcttttagaggaattaagagtcacaaatacatttctcatga |
530 |
Q |
| |
|
||||||||||| |||||| | |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| ||||| || | || ||||| |
|
|
| T |
16653697 |
caacttactgtcatgcaacaaactcgacctcgtcattattctgaatctgatgtctgagaacttttagatgaattgagagtgtttgatgattatcgcatga |
16653796 |
T |
|
| Q |
531 |
agttttatgactacctatgtgaaaaggagcacaaaaaacgtaagctttttgacgtacctccttatatgagaggagaatctctccttaaaatgatgactaa |
630 |
Q |
| |
|
|||||||| | | | ||||| || |||||||||||||||||| ||||||| ||||||| | ||||||||| ||| ||||| |||||||||||| | | |
|
|
| T |
16653797 |
agttttataatcatttgtgtgataatgagcacaaaaaacgtaagatttttgaggtacctcgtcatatgagagctgaagctctctttaaaatgatgaatga |
16653896 |
T |
|
| Q |
631 |
tgctggtttg |
640 |
Q |
| |
|
|||||||||| |
|
|
| T |
16653897 |
tgctggtttg |
16653906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 431 - 640
Target Start/End: Original strand, 17628057 - 17628266
Alignment:
| Q |
431 |
caacttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtatgagatcttttagaggaattaagagtcacaaatacatttctcatga |
530 |
Q |
| |
|
||||||||||| |||||| | |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| ||||| || | || ||||| |
|
|
| T |
17628057 |
caacttactgtcatgcaacaaactcgacctcgtcattattctgaatctgatgtctgagaacttttagatgaattgagagtgtttgatgattatcgcatga |
17628156 |
T |
|
| Q |
531 |
agttttatgactacctatgtgaaaaggagcacaaaaaacgtaagctttttgacgtacctccttatatgagaggagaatctctccttaaaatgatgactaa |
630 |
Q |
| |
|
|||||||| | | | ||||| || |||||||||||||||||| ||||||| ||||||| | ||||||||| ||| ||||| |||||||||||| | | |
|
|
| T |
17628157 |
agttttattatcatttgtgtgataatgagcacaaaaaacgtaagatttttgaggtacctcgtcatatgagagctgaagctctctttaaaatgatgaatga |
17628256 |
T |
|
| Q |
631 |
tgctggtttg |
640 |
Q |
| |
|
|||||||||| |
|
|
| T |
17628257 |
tgctggtttg |
17628266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 10414257 - 10414219
Alignment:
| Q |
156 |
tcaaagcggatcaaaccatgctcttgataccatgttaac |
194 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10414257 |
tcaaaacggatcaaaccatgctcttgataccatgttaac |
10414219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 20361813 - 20361732
Alignment:
| Q |
76 |
aaccaaactaatccaagtgaaataggagaaacataacaaccagagacgaacaaaattaacaagaggcacaagacactcaatc |
157 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
20361813 |
aaccaaactaatccaacacaaatatgagaaacataacaactagagacaaacaaaattgacaagaggcacaagacactcaatc |
20361732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 194
Target Start/End: Complemental strand, 10740779 - 10740748
Alignment:
| Q |
163 |
ggatcaaaccatgctcttgataccatgttaac |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10740779 |
ggatcaaaccatgctcttgataccatgttaac |
10740748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 434 - 515
Target Start/End: Original strand, 43695634 - 43695714
Alignment:
| Q |
434 |
cttactgtgatgcaaaagactcgacctcgtcattattcagaatctgatgtatgagatcttttagaggaattaagagtcacaa |
515 |
Q |
| |
|
||||||||||||||| | |||| || ||||||||||||| |||||||||||| |||||||||||| |||||||||| |||| |
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|
| T |
43695634 |
cttactgtgatgcaacaaactctac-tcgtcattattcaaaatctgatgtataggatcttttagagaaattaagagtgacaa |
43695714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 194
Target Start/End: Complemental strand, 2483701 - 2483666
Alignment:
| Q |
159 |
aagcggatcaaaccatgctcttgataccatgttaac |
194 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2483701 |
aagcggatcgaaccatgctcttgataccatgttaac |
2483666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 24135130 - 24135092
Alignment:
| Q |
156 |
tcaaagcggatcaaaccatgctcttgataccatgttaac |
194 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
24135130 |
tcaaagcggatcaaaccacgctcttgataccatcttaac |
24135092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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