View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7494_high_43 (Length: 266)
Name: NF7494_high_43
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_43 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 6595730 - 6595971
Alignment:
| Q |
10 |
aagaatatctaaaagacattcaagtttgttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttcttt |
109 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6595730 |
aagaaaatctaaaagacattcaaatttgttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttcctt |
6595829 |
T |
|
| Q |
110 |
ttcaaattgttttaatatgagctctaaattgatggaaaatggaatgaacttgagattatgtatgaagtggaaaagtccat-aaaaatatgtgtaatcatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
6595830 |
ttcaaattgttttaatatgagctctaaattgatggaaaatggaatgaacttgagattatgtatgaagtggaaaagtccataaaaaatatgtgtaatcatc |
6595929 |
T |
|
| Q |
209 |
gagaaacaacacttagtaatgatgacattctaaactaaaaat |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6595930 |
gagaaacaacacttagtaatgatgacattctaaactaaaaat |
6595971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 89751 - 89575
Alignment:
| Q |
20 |
aaaagacattcaagtttgttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttcaaattgt |
119 |
Q |
| |
|
||||||||||| | ||||||||||||| |||| || | || ||||| ||||| ||| ||||||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
89751 |
aaaagacattccattttgttcacaaaacttatgaaaaagagcattatcgtattccttgccattgtcacattgaaaacattttatttcacgttcaaattgt |
89652 |
T |
|
| Q |
120 |
--tttaatatgagctctaaattgatggaaaatggaatgaacttgagattatgtatga-agtggaaaagtccataaaaa |
194 |
Q |
| |
|
|||||| ||||| | ||||| ||||||||||| ||||| |||| ||| ||| | |||||||||||||||||| |
|
|
| T |
89651 |
gttttaatgtgagcacggaattgtaaaaaaatggaatgtacttgtgatt-tgtttgagattggaaaagtccataaaaa |
89575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 9576955 - 9577111
Alignment:
| Q |
37 |
gttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttcaaatt--gttttaatatgagctct |
134 |
Q |
| |
|
|||||||||||||||| || | | | ||||||||| ||| ||||||| ||||||||| ||||||| || ||||||||| |||||||| ||| || |
|
|
| T |
9576955 |
gttcacaaaatttattaaaaagaaagctatcatattatttttcattgtggcattgaaaacttttaattgctctttcaaattatgttttaatgtgaactag |
9577054 |
T |
|
| Q |
135 |
aaattgatggaaaatggaatgaacttgagattatgtatgaagtggaaaagtccataa |
191 |
Q |
| |
|
||||| | | ||||| |||||||||||||||| | ||||| |||||| ||||||| |
|
|
| T |
9577055 |
aaattaaagaaaaatagaatgaacttgagatttattttgaagaggaaaattccataa |
9577111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 25626075 - 25626290
Alignment:
| Q |
20 |
aaaagacattcaagtttgttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttcaaat--t |
117 |
Q |
| |
|
||||||||||| | ||||||||||||| |||| || | || ||||| ||||| ||| ||||||||||||||||| |||| ||||| ||||||| | |
|
|
| T |
25626075 |
aaaagacattccattttgttcacaaaacttatgaaaaagagcattatcgtattccttgccattgtcacattgaaaacattttatttcacgttcaaattgt |
25626174 |
T |
|
| Q |
118 |
gttttaatatgagctctaaattgatggaaaatggaatgaacttgagattatgtatga-agtggaaaagtcca-taaaaatatgtgtaatcatcgagaaac |
215 |
Q |
| |
|
|||||||| ||||| | ||||| ||||||||||| ||||| |||| ||| ||| | |||||||||||| |||||| || ||||||| ||||| |
|
|
| T |
25626175 |
gttttaatgtgagcacggaattgtaaaaaaatggaatgtacttgtgatt-tgtttgagattggaaaagtccacaaaaaattagtaaaatcatcaagaaat |
25626273 |
T |
|
| Q |
216 |
aacacttagtaatgatg |
232 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
25626274 |
aacacatagtaatgatg |
25626290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 50688924 - 50688835
Alignment:
| Q |
16 |
atctaaaagacattcaagtttgttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaattt |
105 |
Q |
| |
|
||||||| ||||||| | ||||||||||| |||| | || | | |||||| |||||||||| ||||||||| ||||||| |||| |||| |
|
|
| T |
50688924 |
atctaaatgacattccattttgttcacaagatttttgaaaaagaatgttataatattctttgccattgtcacgttgaaaacattttattt |
50688835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 10535639 - 10535738
Alignment:
| Q |
20 |
aaaagacattcaagtttgttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttcaaattgt |
119 |
Q |
| |
|
||||||||||| | ||||||||||||| |||| || | || ||||| ||||| ||| ||||||||||||||||| |||| ||||| |||||||||| |
|
|
| T |
10535639 |
aaaagacattccattttgttcacaaaacttatgaaaaagagcattatcgtattccttgccattgtcacattgaaaacattttatttcacgttcaaattgt |
10535738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University