View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_45 (Length: 263)
Name: NF7494_high_45
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 42634536 - 42634306
Alignment:
| Q |
16 |
ctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttggatcgaagaaactccatcctttttaatgaaattggtttcatttnnnnn |
115 |
Q |
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| T |
42634536 |
ctgcacattacttagcaaaatttgctcttttatccaattcggaccttgtttggatcgaagaaactccatcctttttaatgaaattggtttcatttaaaaa |
42634437 |
T |
|
| Q |
116 |
nnnnnnnnnnttaacaatacaatagaaaactcaacttcttcgaaaaatatttgttttccattccattaactaccacattgccatttatctctgtgattct |
215 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||| |
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| T |
42634436 |
aaataaaaaattaacaatacaatagaaaactcaacttcttcaaaaaatatatgttttccattccattaactaacacattgccatttgtctttgtgattct |
42634337 |
T |
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| Q |
216 |
gaatatgtattgtgaattgtgaccccataat |
246 |
Q |
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|||||||||||| |||||||||||||||||| |
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| T |
42634336 |
gaatatgtattgcgaattgtgaccccataat |
42634306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 25518224 - 25518169
Alignment:
| Q |
16 |
ctgcacattacttagaaaaatttgctcttttatccaattcggaccttgtttggatc |
71 |
Q |
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|||| |||||||||| |||||||||||||| ||||||||||||| ||||||||||| |
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| T |
25518224 |
ctgcgcattacttagcaaaatttgctctttcatccaattcggactttgtttggatc |
25518169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 37433209 - 37433273
Alignment:
| Q |
21 |
cattacttagaaaaatttgctcttttatccaattcggaccttgtttggatcgaagaaactccatc |
85 |
Q |
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|||||||||| |||||||||||||| |||||||| ||| |||| |||||||||||||| ||||| |
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| T |
37433209 |
cattacttagcaaaatttgctctttcttccaattcagactttgtatggatcgaagaaaccccatc |
37433273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 25518171 - 25518133
Alignment:
| Q |
47 |
atccaattcggaccttgtttggatcgaagaaactccatc |
85 |
Q |
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| T |
25518171 |
atccaattcggactttgtttggattgaagaaactccatc |
25518133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 31617071 - 31617120
Alignment:
| Q |
21 |
cattacttagaaaaatttgctcttttatccaattcggaccttgtttggat |
70 |
Q |
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|||||||||| ||||||| ||||| ||||||||||||||| |||||||| |
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| T |
31617071 |
cattacttagcaaaattttatctttcatccaattcggacctagtttggat |
31617120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 20589249 - 20589313
Alignment:
| Q |
21 |
cattacttagaaaaatttgctcttttatccaattcggaccttgtttggatcgaagaaactccatc |
85 |
Q |
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||||| |||| || ||||||||||| ||||||||| || || |||||||||||| ||||||||| |
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| T |
20589249 |
cattatttagcaatatttgctctttcatccaattcaaactttttttggatcgaagtaactccatc |
20589313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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