View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_46 (Length: 259)
Name: NF7494_high_46
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_46 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 53073964 - 53073724
Alignment:
| Q |
19 |
gcctgccattcacttctgagattacaaatatatgtataatcatcatcattactatctatacaaagattaattccgttccatctatgctttttacaggctt |
118 |
Q |
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| T |
53073964 |
gcctgccattcacttctgagattacaaatatatgtataatcatcatcattactatctatacaaagattaattccgtttcatctatgctttttacaggctt |
53073865 |
T |
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| Q |
119 |
cgtgagcttcacacactcaagggacatgttgaatctgtggtgaagctgaaaggtttggacattgatactatccagcagcactacaccgtgtgagaagctc |
218 |
Q |
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| T |
53073864 |
cgtgagcttcacacactcaagggacatgttgaatctgtggtgaagctgaaaggtttggacattgatactatccagcagcactacaccgtgtgagaagctc |
53073765 |
T |
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| Q |
219 |
tcttaaattgtagataccagaatggccaaagttcaacaaca |
259 |
Q |
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| T |
53073764 |
tctaaaattgtagataccagaatggccaaagttcaacaaca |
53073724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 48434949 - 48434867
Alignment:
| Q |
122 |
gagcttcacacactcaagggacatgttgaatctgtggtgaagctgaaaggtttggacattgatactatccagcagcactacac |
204 |
Q |
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| T |
48434949 |
gagctccatacactcaagggacatgttgaatctgtggtgaagttgaagggtcttgacattgatacgattcaacaacactacac |
48434867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 189
Target Start/End: Original strand, 15871226 - 15871307
Alignment:
| Q |
108 |
tttacaggcttcgtgagcttcacacactcaagggacatgttgaatctgtggtgaagctgaaaggtttggacattgatactat |
189 |
Q |
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| T |
15871226 |
tttacaggcttcgtgaacttcatacccttaaaggacatgttgaatctgttgtgaagctgaaaggactggacatagagactat |
15871307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 1495271 - 1495167
Alignment:
| Q |
113 |
aggcttcgtgagcttcacacactcaagggacatgttgaatctgtggtgaagctgaaaggtttggacattgatactatccagcagcactacaccgtgtgag |
212 |
Q |
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| T |
1495271 |
aggcttagggaggttcatactctcaagggacatgtagaatcagtggtgaagctgaagggactagatattgatacaattcagcagcactacacagtttaag |
1495172 |
T |
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| Q |
213 |
aagct |
217 |
Q |
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| T |
1495171 |
aagct |
1495167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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