View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_47 (Length: 255)
Name: NF7494_high_47
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_47 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 7665826 - 7665588
Alignment:
| Q |
1 |
cttctttcactgtgtagttactgtcagtgactgtattattgaggcattgttgtacaatagtttgtaagtgatcattctttgcaagttcagctttcaattg |
100 |
Q |
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| T |
7665826 |
cttctttcactgtgtagttactgtcagtgactgtattattgaggcattgttgtacaatagtttgtaagtgatcattctttgcaagttcagctttcaattg |
7665727 |
T |
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| Q |
101 |
cttcagaaatgagttctcaactgatgaccacgataatgccatgactctggaaagagcatcagcagccacattct-ccttccctggcttgtactcaatatg |
199 |
Q |
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| T |
7665726 |
cttcagaaatgagttctcaactgatgaccacgataatgccatgactctggaaagagcatcagcagccacattctcccttccctggcttgtactcaatatg |
7665627 |
T |
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| Q |
200 |
aaaatcagaaccaatgaacttatgcaaccaagcttgttg |
238 |
Q |
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| T |
7665626 |
aaaatcataaccaatgaacttatgcaaccaagcttgttg |
7665588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 10995686 - 10995627
Alignment:
| Q |
180 |
cctggcttgtactcaatatgaaaatcagaaccaatgaacttatgcaaccaagcttgttgt |
239 |
Q |
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| T |
10995686 |
cctggcttgtattcaatatgaaaatcaaagccaataaacttgtgtaaccatgcttgttgt |
10995627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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