View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_49 (Length: 249)
Name: NF7494_high_49
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 4849846 - 4849632
Alignment:
| Q |
13 |
aatatggatactgcaacaaatagtgatgcttataaattaccggccaaagtattgaggaatgtagcccagtcaaaaaatgtttcacggcccttgggattta |
112 |
Q |
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| T |
4849846 |
aatatggatactgcaacaaatagtgatgcttataaattaccggccaaagtattgaggaatgtagcccagtcaaaaaatgtttcacggcccttgggattta |
4849747 |
T |
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| Q |
113 |
tctaccaatatacatatactcctcttgactttaattatgattattatgtctactttcacttcaatgaaattgcgaaattttcagatgggaaaagaagaaa |
212 |
Q |
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| T |
4849746 |
tctaccaatatacatatactcctctagactttaattatgattattatgtctactttcacttcaatgaaattgcgaaattttcagatgggaaaaaaagaaa |
4849647 |
T |
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| Q |
213 |
aataaatatcactgt |
227 |
Q |
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| T |
4849646 |
aataaatatcactgt |
4849632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 234
Target Start/End: Complemental strand, 4795243 - 4795037
Alignment:
| Q |
31 |
aatagtgatgcttataaattaccggccaaagtattgaggaatgtagcccagtcaaaaaatgtttcacggcccttgggatttatctaccaatatacatata |
130 |
Q |
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| T |
4795243 |
aataatgatgcttataaattaccatccaaagtattaaggagtacagcccaaccaaataatgtgtcacaccccttgggatttatttatgaatatacatatt |
4795144 |
T |
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| Q |
131 |
ctcctc---ttgactttaattatgattattatgtctactttcacttcaatgaaattgcgaaattttcagatgggaaaagaagaaaaataaatatcactgt |
227 |
Q |
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| T |
4795143 |
ctccacccctagacaaaacatatgaatattatgtctattttcacttcaatgaaattgagaaactttcaggtggtaaaaaaagaaaaataaacatcacagt |
4795044 |
T |
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| Q |
228 |
caactat |
234 |
Q |
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|||||| |
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| T |
4795043 |
aaactat |
4795037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 224
Target Start/End: Complemental strand, 4831116 - 4831036
Alignment:
| Q |
144 |
taattatgattattatgtctactttcacttcaatgaaattgcgaaattttcagatgggaaaagaagaaaaataaatatcac |
224 |
Q |
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| T |
4831116 |
taattctgagtattatgtctactttcactttactgaaattgtgaaactttctgatgggaaaaaaagaaaaatcaatatcac |
4831036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 4805208 - 4805138
Alignment:
| Q |
154 |
tattatgtctactttcacttcaatgaaattgcgaaattttcagatgggaaaagaagaaaaataaatatcac |
224 |
Q |
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| T |
4805208 |
tattatgtttaccttcactttaatgaaattgagaaactttcggatgggaaaaaaagaaaaataaatatcac |
4805138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 4849634 - 4849594
Alignment:
| Q |
90 |
tgtttcacggcccttgggatttatctaccaatatacatata |
130 |
Q |
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| T |
4849634 |
tgtttcacggcccttgggatttatctaccaatatacatata |
4849594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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