View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_high_9 (Length: 529)
Name: NF7494_high_9
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 16 - 514
Target Start/End: Original strand, 12577186 - 12577684
Alignment:
| Q |
16 |
atcgtcaaatcaaaacagaactgtttaaccaagcctaatgcaatcatttccttctattcaatatatatacacaaactaacagcattatgattctatatta |
115 |
Q |
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| T |
12577186 |
atcgtcaaatcaaaacagaactgtttaaccaagcctaatgcaatcatttccttctattcaatatatatacacaaactaacagcattatgattctatatta |
12577285 |
T |
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| Q |
116 |
aaatttaataacaatattcttgactagctgcaactaggtcattgattaacccttacctttcagccgtttcactgatcttcttcgcaaggattgctccctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12577286 |
aaatttaataacaatattcttgactagctgcaactaggtcattgattaacccttacctttcagccgtttcactgatcttcttcgcaaggattgctccctt |
12577385 |
T |
|
| Q |
216 |
tctaggtttcttagtctgattcatcaaaacaataaacacacatgatgttagcatcaccccacaaaaacaataacattgaaacctaaacagtaaacaaaac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12577386 |
tctaggtttcttagtctgattcatcaaaacaataaacacacatgatgttagcatcaccccacaaaaacaataacattgaaacctaaacagtaaacaaaac |
12577485 |
T |
|
| Q |
316 |
aaatacctacatcttgtaatggaacagaacgaatcctaacagattcaacttcaccaaaaaccttaaactccttcaacaaagtcttcttcttcaccttaac |
415 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12577486 |
aaatacctacatcttgtaatggaacggaacgaatcctaacagattcaacttcaccaaaaaccttaaactccttcaacaaagtcttcttcttcaccttaac |
12577585 |
T |
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| Q |
416 |
aggtaaattcccaacaaaaatagtcctcaaaagcttatcttcatcatcaaaaccttcttttgtaaccatcatatccgcgggattatcacgcacttttct |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12577586 |
aggtaaattcccaacaaaaatagtcctcaaaagcttatcttcatcatcaaaaccttcttttgtaaccatcatatccgcgggattatcacgcacttttct |
12577684 |
T |
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