View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_10 (Length: 532)
Name: NF7494_low_10
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_10 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 10 - 516
Target Start/End: Original strand, 6595464 - 6595971
Alignment:
| Q |
10 |
aagaatatacaaggtgttcaacgaggttgtaacttatttctagacattgaagaaatgaaagggtagctgagacatccaaagactcaaagatgagaatagt |
109 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
6595464 |
aagaagatataaggtgttcaacgaggttgtaacttatttctaaaggttgaagaaatgaaagggtagctgagacatccaaagattcaaagatgagaatggt |
6595563 |
T |
|
| Q |
110 |
atgaatctttttgatagagtattttagtgcgtgattagagggaaaactttttatttgggataatattatgtaggtagagaggcatgggcaagaagggtac |
209 |
Q |
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| T |
6595564 |
acaaatctttttgatagagtattttagtgcatgattagagggaaaactttctatttgggataatattatgtaggtagagaggcatgggcaagaagggtac |
6595663 |
T |
|
| Q |
210 |
aaatggtgttgttgatggtacatatttttcttttgacttttctattttgcggggatgtgtgaggacaagaaaatctaaaagacattcaagtttgttcaca |
309 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
6595664 |
aaatggtgttgttgatggtacatatttttgttttgacttttctattttgcggggatgtgtaaggacaagaaaatctaaaagacattcaaatttgttcaca |
6595763 |
T |
|
| Q |
310 |
aaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttcaaattgttttaatatgagctctaaattgatg |
409 |
Q |
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| T |
6595764 |
aaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttccttttcaaattgttttaatatgagctctaaattgatg |
6595863 |
T |
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| Q |
410 |
gaaaatggaatgaacttgagattatgtatgaagtggaaaagtccat-aaaaatatgtgtaatcatcgagaaacaacacttagtaatgatgacattctaaa |
508 |
Q |
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| T |
6595864 |
gaaaatggaatgaacttgagattatgtatgaagtggaaaagtccataaaaaatatgtgtaatcatcgagaaacaacacttagtaatgatgacattctaaa |
6595963 |
T |
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| Q |
509 |
ctaaaaat |
516 |
Q |
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|||||||| |
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| T |
6595964 |
ctaaaaat |
6595971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 460
Target Start/End: Complemental strand, 89816 - 89575
Alignment:
| Q |
221 |
ttgatggtacatatttttcttttgacttttctattttgcggggatgtgtgaggacaagaaaatctaaaagacattcaagtttgttcacaaaatttattca |
320 |
Q |
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| T |
89816 |
ttgattgtacaaatttttctttcggcttttccattttgaggggaggtatgaggacaagagaatcgaaaagacattccattttgttcacaaaacttatgaa |
89717 |
T |
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| Q |
321 |
atatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttcaaattgt--tttaatatgagctctaaattgatggaaaatgga |
418 |
Q |
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| T |
89716 |
aaagagcattatcgtattccttgccattgtcacattgaaaacattttatttcacgttcaaattgtgttttaatgtgagcacggaattgtaaaaaaatgga |
89617 |
T |
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| Q |
419 |
atgaacttgagattatgtatga-agtggaaaagtccataaaaa |
460 |
Q |
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| T |
89616 |
atgtacttgtgatt-tgtttgagattggaaaagtccataaaaa |
89575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 221 - 498
Target Start/End: Original strand, 25626010 - 25626290
Alignment:
| Q |
221 |
ttgatggtacatatttttcttttgacttttctattttgcggggatgtgtgaggacaagaaaatctaaaagacattcaagtttgttcacaaaatttattca |
320 |
Q |
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| T |
25626010 |
ttgattgtacaaatttttctttcggcttttccattttgaggggaggtatgaggacaagagaatcgaaaagacattccattttgttcacaaaacttatgaa |
25626109 |
T |
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| Q |
321 |
atatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttcaaat--tgttttaatatgagctctaaattgatggaaaatgga |
418 |
Q |
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| T |
25626110 |
aaagagcattatcgtattccttgccattgtcacattgaaaacattttatttcacgttcaaattgtgttttaatgtgagcacggaattgtaaaaaaatgga |
25626209 |
T |
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| Q |
419 |
atgaacttgagattatgtatga-agtggaaaagtcca-taaaaatatgtgtaatcatcgagaaacaacacttagtaatgatg |
498 |
Q |
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| T |
25626210 |
atgtacttgtgatt-tgtttgagattggaaaagtccacaaaaaattagtaaaatcatcaagaaataacacatagtaatgatg |
25626290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 371
Target Start/End: Complemental strand, 50688978 - 50688835
Alignment:
| Q |
233 |
atttttcttttgacttttctattttgcggggatgtgtgaggacaaga-----aaatctaaaagacattcaagtttgttcacaaaatttattcaatatagt |
327 |
Q |
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|||||||||| | ||||| |||||| ||||| |||||||||||||| ||||||||| ||||||| | ||||||||||| |||| | || | | | |
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| T |
50688978 |
atttttctttcaaattttccattttgaggggaggtgtgaggacaagacaagtaaatctaaatgacattccattttgttcacaagatttttgaaaaagaat |
50688879 |
T |
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| Q |
328 |
gttatcatattctttgtcattgtcacattgaaaatatttaattt |
371 |
Q |
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| T |
50688878 |
gttataatattctttgccattgtcacgttgaaaacattttattt |
50688835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 233 - 385
Target Start/End: Original strand, 10535586 - 10535738
Alignment:
| Q |
233 |
atttttcttttgacttttctattttgcggggatgtgtgaggacaagaaaatctaaaagacattcaagtttgttcacaaaatttattcaatatagtgttat |
332 |
Q |
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|||||||||| | |||||| |||||| ||||| || ||||||||||| |||| ||||||||||| | ||||||||||||| |||| || | || |||| |
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| T |
10535586 |
atttttctttcggcttttccattttgaggggaggtatgaggacaagagaatcgaaaagacattccattttgttcacaaaacttatgaaaaagagcattat |
10535685 |
T |
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| Q |
333 |
catattctttgtcattgtcacattgaaaatatttaatttctttttcaaattgt |
385 |
Q |
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| T |
10535686 |
cgtattccttgccattgtcacattgaaaacattttatttcacgttcaaattgt |
10535738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 233 - 460
Target Start/End: Original strand, 4803863 - 4804092
Alignment:
| Q |
233 |
atttttcttttgacttttctattttgcggggatgtgtgaggacaagaaaatctaaaagacattcaagtttgttcacaaaatttattcaatatagtgttat |
332 |
Q |
| |
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|||| ||||| |||||||| |||||| ||||| || ||||||||||| |||| ||||||||||| | ||||||||||||| ||| ||| | || |||| |
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| T |
4803863 |
atttctctttcgacttttccattttgaggggaggtatgaggacaagagaatcgaaaagacattccattttgttcacaaaacctatgcaaaagagcattat |
4803962 |
T |
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| Q |
333 |
catattctttgtcattgtcacattgaaaatatttaatttctttttcaaat--tgttttaatatgagctctaaattgatggaaaatggaatgaacttgaga |
430 |
Q |
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| T |
4803963 |
cgtattccttgccattatcacattgaaaacattttatttcacgttcaaattgtgttttaatgtgagcacggaattgtaaaaaaatggaatgtacttgtga |
4804062 |
T |
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| Q |
431 |
ttatgtatga-agtggaaaagtccataaaaa |
460 |
Q |
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| T |
4804063 |
tta-gtatgagattggaaaagtccacaaaaa |
4804092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 303 - 457
Target Start/End: Original strand, 9576955 - 9577111
Alignment:
| Q |
303 |
gttcacaaaatttattcaatatagtgttatcatattctttgtcattgtcacattgaaaatatttaatttctttttcaaatt--gttttaatatgagctct |
400 |
Q |
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|||||||||||||||| || | | | ||||||||| ||| ||||||| ||||||||| ||||||| || ||||||||| |||||||| ||| || |
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| T |
9576955 |
gttcacaaaatttattaaaaagaaagctatcatattatttttcattgtggcattgaaaacttttaattgctctttcaaattatgttttaatgtgaactag |
9577054 |
T |
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| Q |
401 |
aaattgatggaaaatggaatgaacttgagattatgtatgaagtggaaaagtccataa |
457 |
Q |
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||||| | | ||||| |||||||||||||||| | ||||| |||||| ||||||| |
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| T |
9577055 |
aaattaaagaaaaatagaatgaacttgagatttattttgaagaggaaaattccataa |
9577111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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