View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_13 (Length: 522)
Name: NF7494_low_13
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Complemental strand, 28669940 - 28669447
Alignment:
| Q |
19 |
ataaaggaactgttatctaaagaaaattcaccaatatacagagatacttctttgaaagagtatttggcatatcgttttgcaaacggccttggagcttctg |
118 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28669940 |
ataaaggaattgttatctaaagaaaatccaccaatatacagagatacttctttgaaagagtatttggcatatcgttttgcaaatggccttggagcttctg |
28669841 |
T |
|
| Q |
119 |
cactatcacccttcaagttgtcacacaaagaagcaacttagtgttcatttcattttcaataaatatttattgttaagctattgtagttcgtgtaatatat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28669840 |
cactatcacccttcaagttgtcacacaaagaagcaacttagtgttcatttcattttcaataaatatttattgttaagctattgtagtccgtgtaatatat |
28669741 |
T |
|
| Q |
219 |
tgttacccttgtaaattaatttaattannnnnnn-aaatttattagattgttttgaaaaacttgttatagtacatgtatcaggtgagtagctnnnnnnnc |
317 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
28669740 |
tgttacccttgtaaattaacttaattattttttttaaatttattagattgttttgaaaaaattgttatagtacatgtatcaggtgagtagctaaaaaaac |
28669641 |
T |
|
| Q |
318 |
taatcccttattggataatgaagatacagaagtcaacactatcagttgactattattacttgcagtctaagcaactagtcgtagagtaattagctactct |
417 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
28669640 |
taatcccttattggataatgaagatacagaagtcaacactatcagctgactattattacttgcagtctaagcaactagtcgcagagtaattagctacact |
28669541 |
T |
|
| Q |
418 |
ataacatatgatagcttaatgtacacaagcattctgtctatatatacttgctgtaatcactgattcattaatgacaattcatatcttcattcat |
511 |
Q |
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| T |
28669540 |
ataacacatgatagcttaatgtagacaagcattctgtctatatatacttgctgtaatcactgattcattaatgataattcatatcttcattcat |
28669447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 28647832 - 28647715
Alignment:
| Q |
22 |
aaggaactgttatctaaagaaaattcaccaatatacagagatacttctttgaaagagtatttggcatatcgttttgcaaacggccttggagcttctgcac |
121 |
Q |
| |
|
|||||||| |||||||||||||| | |||||||||| |||||| |||||||||||||| ||| ||||||||| |||| ||| ||||||||||||||| |
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| T |
28647832 |
aaggaacttttatctaaagaaaaccctccaatatacaaagatacatctttgaaagagtacttgaaatatcgtttggcaagcgggtttggagcttctgcac |
28647733 |
T |
|
| Q |
122 |
tatcacccttcaagttgt |
139 |
Q |
| |
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||||||| |||||||||| |
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| T |
28647732 |
tatcacctttcaagttgt |
28647715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 28639090 - 28638973
Alignment:
| Q |
22 |
aaggaactgttatctaaagaaaattcaccaatatacagagatacttctttgaaagagtatttggcatatcgttttgcaaacggccttggagcttctgcac |
121 |
Q |
| |
|
|||||||| |||||| ||||||| |||||||||||| ||| ||||||||||||||||| ||| ||||||||| |||| ||| ||||||||||||||| |
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| T |
28639090 |
aaggaacttttatctgaagaaaacccaccaatatacaaagacacttctttgaaagagtacttgaaatatcgtttggcaagcggttttggagcttctgcac |
28638991 |
T |
|
| Q |
122 |
tatcacccttcaagttgt |
139 |
Q |
| |
|
|||| || |||||||||| |
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|
| T |
28638990 |
tatcccctttcaagttgt |
28638973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 122
Target Start/End: Complemental strand, 28673010 - 28672910
Alignment:
| Q |
22 |
aaggaactgttatctaaagaaaattcaccaatatacagagatacttctttgaaagagtatttggcatatcgttttgcaaacggccttggagcttctgcac |
121 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||| |||||||| |||||||| ||||| |||||||| |
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| T |
28673010 |
aaggaactgttatctaaagaaaatctaccaatatatagagacacttctttgaaagagttcttggcacatcgttttacaaacggcattggattttctgcac |
28672911 |
T |
|
| Q |
122 |
t |
122 |
Q |
| |
|
| |
|
|
| T |
28672910 |
t |
28672910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 325 - 444
Target Start/End: Original strand, 11921877 - 11921996
Alignment:
| Q |
325 |
ttattggataatgaagatacagaagtcaacactatcagttgactattattacttgcagtctaagcaactagtcgtagagtaattagctactctataacat |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||||||| ||||||||||| ||| |||| || |
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|
| T |
11921877 |
ttattggataatgaagatacagaagtcaacactatcagttgactattgttacttacaacttaataaactagtcttagagtaattacatacattatagcac |
11921976 |
T |
|
| Q |
425 |
atgatagcttaatgtacaca |
444 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
11921977 |
atgatagcttaatgtacaca |
11921996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 326 - 409
Target Start/End: Original strand, 11927081 - 11927163
Alignment:
| Q |
326 |
tattggataatgaagatacagaagtcaacactatcagttgactattattacttgcagtctaagcaactagtcgtagagtaatta |
409 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||| |
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|
| T |
11927081 |
tattggataatgtagatacaaaagtcaacactattagttgactattattacttacaacctaagcaactagt-ttagagtaatta |
11927163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 372 - 473
Target Start/End: Complemental strand, 25633531 - 25633426
Alignment:
| Q |
372 |
attacttgcagtctaagcaactag-tcgtagagtaattagctactctataacatatgatagcttaat----gtacacaagcattctgtctatatatactt |
466 |
Q |
| |
|
||||||||||| |||||||||||| || |||||| |||||||| ||||| ||||||||||||||| |||||||| ||| ||||||||||||||| |
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|
| T |
25633531 |
attacttgcagcctaagcaactagatctaagagtacttagctacactatagtatatgatagcttaattaatgtacacaaacata-tgtctatatatactt |
25633433 |
T |
|
| Q |
467 |
gctgtaa |
473 |
Q |
| |
|
||||||| |
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|
| T |
25633432 |
gctgtaa |
25633426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 397
Target Start/End: Complemental strand, 8072807 - 8072735
Alignment:
| Q |
326 |
tattggataatgaagatacagaa-gtcaacactatcagttgactattattacttgcagtctaagcaactagtc |
397 |
Q |
| |
|
|||||| |||| |||||| |||| ||||||||||||||||||||| || |||||||| |||||||||||||| |
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|
| T |
8072807 |
tattggttaatcaagatatagaaagtcaacactatcagttgactaacatgacttgcagcctaagcaactagtc |
8072735 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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