View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_14 (Length: 511)
Name: NF7494_low_14
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 6697309 - 6697595
Alignment:
| Q |
16 |
atgaatacagttcaaagacacaagcacaagactcaccaagcctaaaagttaacctcaaaaaatttagccttcacatgagagaccaaacacaaaaaacaaa |
115 |
Q |
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| T |
6697309 |
atgaatacagttcaaagacacaagcacaagattcaccaagcctaaaagttaacctcaaaaaatttagccttcacatgagagaccaaacacaaaaaacaaa |
6697408 |
T |
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| Q |
116 |
cagtacagtctacagcctgcagcattttgcaggattaaattttatcaaacaccagctcttaaatgatacttacctagacccctaaaattaccatctgctg |
215 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6697409 |
cagtacagtctacaacctgcagcattttgcaggattaaattttatcaaacaccagctcttaaatgatacttacctagacccctaaaattaccatctgctg |
6697508 |
T |
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| Q |
216 |
ctgaaaagtgcagattctcttcatttatgtatcagcattaataggcatcacacataaccacttgttgttcgaccaatgcagcttggt |
302 |
Q |
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| T |
6697509 |
ctgaaaattgcagattctcttcatttatgcattagcattaataggcatcacacataaccacttgttgttcgaccaatgcagcttggt |
6697595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 330 - 493
Target Start/End: Original strand, 6697608 - 6697771
Alignment:
| Q |
330 |
caccaatggttttaggcctcaaaattttacgaccaattctcttgatcccaaaaggaatcttatataattatgcaatacaagcacaatttgcactaaatgt |
429 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6697608 |
caccaatggttttaggcctcaaaattttaagaccaattctcttgatcccaaaaggaatcttatataattatgcaatacaagcacaatttgcactaaatgt |
6697707 |
T |
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| Q |
430 |
ttggtacaagtggtaataaagccttgtcaagttctaaatcaaaccttgtatttatcacaaagac |
493 |
Q |
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| T |
6697708 |
ttggtacaagtggtaataaagccttgtcaagctctaaatcaaaccttgtatttatcacaaagac |
6697771 |
T |
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