View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7494_low_16 (Length: 503)

Name: NF7494_low_16
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7494_low_16
NF7494_low_16
[»] chr6 (2 HSPs)
chr6 (10-485)||(24417046-24417521)
chr6 (17-45)||(1459541-1459569)
[»] chr2 (6 HSPs)
chr2 (12-337)||(33020331-33020654)
chr2 (155-346)||(33038353-33038544)
chr2 (84-289)||(33026750-33026949)
chr2 (84-149)||(33038250-33038315)
chr2 (10-46)||(34560916-34560952)
chr2 (95-219)||(34570303-34570427)
[»] chr4 (4 HSPs)
chr4 (359-475)||(9581099-9581217)
chr4 (359-475)||(9586794-9586912)
chr4 (359-469)||(9602037-9602149)
chr4 (12-45)||(22672127-22672160)
[»] scaffold0044 (1 HSPs)
scaffold0044 (12-289)||(89161-89432)
[»] chr3 (25 HSPs)
chr3 (84-218)||(7942575-7942709)
chr3 (99-209)||(43992065-43992175)
chr3 (235-287)||(2456484-2456536)
chr3 (95-206)||(9561827-9561938)
chr3 (90-208)||(37757573-37757691)
chr3 (235-287)||(771260-771312)
chr3 (157-189)||(2635881-2635913)
chr3 (90-202)||(12218123-12218235)
chr3 (244-284)||(37753118-37753158)
chr3 (237-284)||(783590-783637)
chr3 (12-47)||(2456267-2456302)
chr3 (12-54)||(4142125-4142167)
chr3 (239-289)||(12133309-12133359)
chr3 (15-48)||(2476655-2476688)
chr3 (12-45)||(3754618-3754651)
chr3 (12-45)||(4157944-4157977)
chr3 (12-45)||(7432054-7432087)
chr3 (243-288)||(7942728-7942773)
chr3 (12-45)||(23197030-23197063)
chr3 (243-283)||(956612-956652)
chr3 (240-284)||(1438225-1438269)
chr3 (18-54)||(7334230-7334266)
chr3 (253-289)||(12218280-12218316)
chr3 (12-48)||(13498242-13498278)
chr3 (237-285)||(43992197-43992245)
[»] scaffold1004 (2 HSPs)
scaffold1004 (235-286)||(2369-2420)
scaffold1004 (107-209)||(2247-2349)
[»] scaffold0760 (2 HSPs)
scaffold0760 (235-286)||(4864-4915)
scaffold0760 (107-209)||(4742-4844)
[»] chr5 (7 HSPs)
chr5 (242-287)||(23644651-23644696)
chr5 (10-45)||(23766862-23766897)
chr5 (10-45)||(23816710-23816745)
chr5 (253-287)||(23769428-23769462)
chr5 (253-287)||(23819276-23819310)
chr5 (242-287)||(23732387-23732432)
chr5 (242-287)||(23813878-23813923)
[»] chr1 (1 HSPs)
chr1 (10-54)||(51381446-51381490)
[»] chr7 (2 HSPs)
chr7 (292-341)||(27756027-27756076)
chr7 (363-423)||(42447112-42447171)


Alignment Details
Target: chr6 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 10 - 485
Target Start/End: Complemental strand, 24417521 - 24417046
Alignment:
Q  10 aagaatatggaaataaagaatcttggactaaattgtacagtattctacacatgcaagaccgggtaatacgtctttatacaaaggctttatatatttttga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24417521 aagaatatggaaataaagaatcttggactaaattgtacagtattctacacatgcaagaccgggtaatacgtctttatacaaaggctttatatatttttga 24417422  T
Q  110 ggatgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacgattccaaaaatggtatcttgaagattcctgagatt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24417421 ggatgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacaattccaaaaatggtatcttgaagattcctgagatt 24417322  T
Q  210 ggaaacatccggcgttgcttgcagctggacccagaagtctacattgaaagtctgatatcaccttgttcttaatgttaggacgctatgatatgcaacttga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24417321 ggaaacatccggcgttgcttgcagctggacccagaagtctacattgaaagtctgatatcaccttgttcttaatgttaggacgctatgatatgcaacttga 24417222  T
Q  310 acatgagattcaactgcaacatatatatcgttaatttgtttacgccatttattttattaagaaccttatcagtttcagtaaattagccaaagaccactag 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24417221 acatgagattcaactgcaacatatatatcgttaatttgtttacgccatttattttattaagaatcttatcagtttcagtaaattagccaaagaccactag 24417122  T
Q  410 attattttgagttcagttctgatatttgttgtgaaaaatcatggttattacgaggtcttggactggccattaattt 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24417121 attattttgagttcagttctgatatttgttgtgaaaaatcatggttattacgaggtcttggactggccattaattt 24417046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 1459569 - 1459541
Alignment:
Q  17 tggaaataaagaatcttggactaaattgt 45  Q
    |||||||||||||||||||||||||||||    
T  1459569 tggaaataaagaatcttggactaaattgt 1459541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 12 - 337
Target Start/End: Original strand, 33020331 - 33020654
Alignment:
Q  12 gaatatggaaataaagaatcttggactaaattgtacagtattctacacatgcaagaccgggtaatacgtctttatacaaaggctttatatatttttgagg 111  Q
    ||||||||||||||| | |||||||||| ||||||| || |||   ||||| |||| ||||   |  |||  |||||||||||||||||||||| |||||    
T  33020331 gaatatggaaataaaaagtcttggactagattgtaccgtgttccttacatggaagatcggggtttgtgtcactatacaaaggctttatatatttctgagg 33020430  T
Q  112 atgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacgattccaaaaatggtatcttgaagattcctgagattgg 211  Q
    |||||||| ||||||| | |||| | ||||||||||||   |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||      
T  33020431 atgaacaattgctgatggactttaaggagttggaaagtggtaaattgaagttggttgtttacgattccaaagatggtactttgaagattcctgagattca 33020530  T
Q  212 aaacatccggcgttgcttgcagctggacccagaagtctacattgaaagtctgatatcaccttgttcttaatgttag------gacgctatgatatgcaac 305  Q
    ||||||  |  ||||     || |||| ||| |||||||||||||||||   ||||||||||||||||||||||||      || | |||||||||  ||    
T  33020531 aaacattggtggttg-----agatggaaccaaaagtctacattgaaagt---atatcaccttgttcttaatgttaggatgtagatggtatgatatgtcac 33020622  T
Q  306 ttgaacatgagattcaactgcaacatatatat 337  Q
    |||||| || ||||||||||||||| ||||||    
T  33020623 ttgaacctgggattcaactgcaacaaatatat 33020654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 155 - 346
Target Start/End: Original strand, 33038353 - 33038544
Alignment:
Q  155 attgaagttggttgtttacgattccaaaaatggtatcttgaagattcctgagattggaaacatccggcgttgcttgcagctggacccagaagtctacatt 254  Q
    |||||||||| ||||||||||||||||  ||||||  ||| ||||||||||||||  ||||||  |  ||||      | ||||||||||||||||||||    
T  33038353 attgaagttgtttgtttacgattccaatgatggtactttggagattcctgagattcaaaacattggtggttg------gatggacccagaagtctacatt 33038446  T
Q  255 gaaagtctgatatcaccttgttcttaatgttag------gacgctatgatatgcaacttgaacatgagattcaactgcaacatatatatcgttaattt 346  Q
    |||||||||||||||||||||||||||||||||      || |||||||||||  |||||||||||||||| |||||||||| |||||| ||| ||||    
T  33038447 gaaagtctgatatcaccttgttcttaatgttaggatgtagatgctatgatatgtcacttgaacatgagattaaactgcaacaaatatatggtttattt 33038544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 289
Target Start/End: Original strand, 33026750 - 33026949
Alignment:
Q  84 tatacaaaggctttatatatttttgaggatgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacgattccaaaa 183  Q
    ||||||| || ||||||||||| ||||||||||  | || |||| | ||||    |||||||| ||||| ||| |||||||||||||||||||||||||     
T  33026750 tatacaagggttttatatatttctgaggatgaaatattgttgatggactttggaaagttggaatgttaccaatcgaagttggttgtttacgattccaaag 33026849  T
Q  184 atggtatcttgaagattcctgagattggaaacatccggcgttgcttgcagctggacccagaagtctacattgaaagtctgatatcaccttgttcttaatg 283  Q
    ||||||  ||| ||||||||  ||||  ||||||  |  ||||  | ||      |||||||||||||||||||||||||||||||||||||||||||||    
T  33026850 atggtactttggagattcctacgattcaaaacattggtggttggatcca------cccagaagtctacattgaaagtctgatatcaccttgttcttaatg 33026943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Original strand, 33038250 - 33038315
Alignment:
Q  84 tatacaaaggctttatatatttttgaggatgaacaactgctgattggcttttatgagttggaaagt 149  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| | |||| | ||||||||||||    
T  33038250 tatacaaaggctttatatatttctgaggatgaacaattgctgatggactttaaggagttggaaagt 33038315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 34560952 - 34560916
Alignment:
Q  10 aagaatatggaaataaagaatcttggactaaattgta 46  Q
    ||||||||||||||||| |||||||||||||||||||    
T  34560952 aagaatatggaaataaaaaatcttggactaaattgta 34560916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 219
Target Start/End: Complemental strand, 34570427 - 34570303
Alignment:
Q  95 tttatatatttttgaggatgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacgattccaaaaatggtatcttg 194  Q
    ||||||||||| ||||| ||| ||| || |||| ||||| ||||||||   |||| | | ||| ||||| |||||||||| ||  | |||| |||| |||    
T  34570427 tttatatatttatgaggttgaccaattgttgatgggcttgtatgagttcagaagtaatatattcaagttagttgtttacgtttttagaaattgtattttg 34570328  T
Q  195 aagattcctgagattggaaacatcc 219  Q
    |||||||||||||||  ||||||||    
T  34570327 aagattcctgagattcaaaacatcc 34570303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 359 - 475
Target Start/End: Complemental strand, 9581217 - 9581099
Alignment:
Q  359 tattttattaagaaccttatcagtttcagtaaattagccaaagaccactagattattttgagttcagttctgatatttgt--tgtgaaaaatcatggtta 456  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||  ||||||| ||||| ||||    
T  9581217 tattttactaagaatcttatcagtttcagtaaattagccaaagaccactaggttattttgagttcaattctgatttttgttgtgtgaaatatcatcgtta 9581118  T
Q  457 ttacgaggtcttggactgg 475  Q
    ||| || |||||| |||||    
T  9581117 ttatgacgtcttgaactgg 9581099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 359 - 475
Target Start/End: Complemental strand, 9586912 - 9586794
Alignment:
Q  359 tattttattaagaaccttatcagtttcagtaaattagccaaagaccactagattattttgagttcagttctgatatttgt--tgtgaaaaatcatggtta 456  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||  ||||||| ||||| ||||    
T  9586912 tattttactaagaatcttatcagtttcagtaaattagccaaagaccactaggttattttgagttcaattctgatttttgttgtgtgaaatatcatcgtta 9586813  T
Q  457 ttacgaggtcttggactgg 475  Q
    ||| || |||||| |||||    
T  9586812 ttatgacgtcttgaactgg 9586794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 359 - 469
Target Start/End: Complemental strand, 9602149 - 9602037
Alignment:
Q  359 tattttattaagaaccttatcagtttcagtaaattagccaaagaccactagattattttgagttcagttctgatatttgt--tgtgaaaaatcatggtta 456  Q
    |||||| || |||| |||||||||||||||||||||| ||||||||||||| |||||||||||||| || |||| |||||  ||||||| ||| | ||||    
T  9602149 tattttgtttagaatcttatcagtttcagtaaattagtcaaagaccactaggttattttgagttcaattttgatttttgtcgtgtgaaatatcgtagtta 9602050  T
Q  457 ttacgaggtcttg 469  Q
    |||||||||||||    
T  9602049 ttacgaggtcttg 9602037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 22672160 - 22672127
Alignment:
Q  12 gaatatggaaataaagaatcttggactaaattgt 45  Q
    |||||||||||||| |||||||||||||||||||    
T  22672160 gaatatggaaataaggaatcttggactaaattgt 22672127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 289
Target Start/End: Original strand, 89161 - 89432
Alignment:
Q  12 gaatatggaaataaagaatcttggactaaattgtacagtattctacacatgcaagaccg-ggtaatacgtctttatacaaaggctttatatatttttgag 110  Q
    ||||||||||||||||| ||||||||||||||||||| | |||   ||||| |||| || |||    |||| | |||| |||| ||| ||| |||  |||    
T  89161 gaatatggaaataaagagtcttggactaaattgtacaatgttccttacatggaagatcgtggtttgtcgtcct-ataccaaggttttgtatgtttccgag 89259  T
Q  111 gatgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacgattccaaaaatggtatcttgaagattcctgagattg 210  Q
    |||||  || ||||||| |  ||||||||||||| ||||  ||||||||| ||||||||||| ||||| ||||||||||  ||||||||||||| ||||     
T  89260 gatgacaaaatgctgatggaattttatgagttgggaagtagcaaattgaaattggttgtttatgattcaaaaaatggtactttgaagattcctgtgattc 89359  T
Q  211 gaaacatccggcgttgcttgcagctggacccagaagtctacattgaaagtctgatatcaccttgttcttaatgttagga 289  Q
     |||||||   |||      | | |||||||| ||||||||||||| ||| |||||||||||||||||||| |||||||    
T  89360 aaaacatcaatcgt------cggatggacccaaaagtctacattgagagtttgatatcaccttgttcttaacgttagga 89432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 7942575 - 7942709
Alignment:
Q  84 tatacaaaggctttatatatttttgaggatgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacgattccaaaa 183  Q
    |||||||| ||||||||||||| ||| |||||  ||||||| || |  ||||||||| | | |||| ||| |||||||||||||||||||||||||||||    
T  7942575 tatacaaaagctttatatatttctgatgatgagaaactgctaatggatttttatgaggtaggaagtaacatattgaagttggttgtttacgattccaaaa 7942674  T
Q  184 atggtatcttgaagattcctgagattggaaacatc 218  Q
    | | ||  |||||||||| |||||||  |||||||    
T  7942675 acgatactttgaagattcatgagattcaaaacatc 7942709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 209
Target Start/End: Original strand, 43992065 - 43992175
Alignment:
Q  99 tatatttttgaggatgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacgattccaaaaatggtatcttgaaga 198  Q
    ||||||| |||||||||  || || | ||||  |||||||| |||  ||||| | |||||| ||||| |||||||||||||||||||||||   ||||||    
T  43992065 tatatttctgaggatgattaagtgttaattgatttttatgaattgacaagttccgaattgacgttggctgtttacgattccaaaaatggtactctgaaga 43992164  T
Q  199 ttcctgagatt 209  Q
    |||||||||||    
T  43992165 ttcctgagatt 43992175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 2456484 - 2456536
Alignment:
Q  235 tggacccagaagtctacattgaaagtctgatatcaccttgttcttaatgttag 287  Q
    |||||||||||||||||||||| ||| | ||||||||||||||| ||||||||    
T  2456484 tggacccagaagtctacattgagagtgttatatcaccttgttctaaatgttag 2456536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 9561938 - 9561827
Alignment:
Q  95 tttatatatttttgaggatgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacgattccaaaaatggtatcttg 194  Q
    |||||||| || ||||||||| ||||||||| | |  ||| ||||| ||  |||| ||||| |||||||||||||||||||||| || | |||||  |||    
T  9561938 tttatatagttctgaggatgaccaactgctgctagagtttaatgagatgcgaagtgacaaagtgaagttggttgtttacgattctaagactggtactttg 9561839  T
Q  195 aagattcctgag 206  Q
    || |||||||||    
T  9561838 aatattcctgag 9561827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 37757691 - 37757573
Alignment:
Q  90 aaggctttatatatttttgaggatgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacgattccaaaaatggta 189  Q
    |||||||||||||||| ||| || || ||| || |||| | |||  ||||||||| ||||  | |||||||| | | |||||| |||| |||||||||||    
T  37757691 aaggctttatatatttctgatgaggatcaagtgttgatggacttgcatgagttgggaagtatcgaattgaaggtcggtgtttatgatttcaaaaatggta 37757592  T
Q  190 tcttgaagattcctgagat 208  Q
    | |||||||||| ||||||    
T  37757591 ttttgaagattcttgagat 37757573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 771312 - 771260
Alignment:
Q  235 tggacccagaagtctacattgaaagtctgatatcaccttgttcttaatgttag 287  Q
    ||||||||||||||||||| || ||| ||||||||||||||||| ||| ||||    
T  771312 tggacccagaagtctacatagagagtttgatatcaccttgttctaaatattag 771260  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 2635881 - 2635913
Alignment:
Q  157 tgaagttggttgtttacgattccaaaaatggta 189  Q
    |||||||||||||||||||||||||||||||||    
T  2635881 tgaagttggttgtttacgattccaaaaatggta 2635913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 12218123 - 12218235
Alignment:
Q  90 aaggctttatatatttttgaggatgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacgattccaaaaatggta 189  Q
    |||| |||| || ||| ||||||||| ||| ||||| | |  ||||||||| ||| |||| |||||  ||||||||||||||| | |||||||| |||||    
T  12218123 aaggttttacatgtttctgaggatgatcaattgctgttggatttttatgagctgggaagtaacaaaaagaagttggttgtttatggttccaaaattggta 12218222  T
Q  190 tcttgaagattcc 202  Q
      |||||||||||    
T  12218223 ctttgaagattcc 12218235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 37753158 - 37753118
Alignment:
Q  244 aagtctacattgaaagtctgatatcaccttgttcttaatgt 284  Q
    ||||||||| ||| |||||||||||||||||||||||||||    
T  37753158 aagtctacactgagagtctgatatcaccttgttcttaatgt 37753118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 284
Target Start/End: Complemental strand, 783637 - 783590
Alignment:
Q  237 gacccagaagtctacattgaaagtctgatatcaccttgttcttaatgt 284  Q
    ||||| ||||||||| |||| ||| |||||||||||||||||||||||    
T  783637 gacccggaagtctacgttgagagtttgatatcaccttgttcttaatgt 783590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 2456267 - 2456302
Alignment:
Q  12 gaatatggaaataaagaatcttggactaaattgtac 47  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2456267 gaatatggaaataaagactcttggactaaattgtac 2456302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 4142167 - 4142125
Alignment:
Q  12 gaatatggaaataaagaatcttggactaaattgtacagtattc 54  Q
    ||||||||||||||||| |||||||||||||||| || |||||    
T  4142167 gaatatggaaataaagagtcttggactaaattgttcactattc 4142125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 12133309 - 12133359
Alignment:
Q  239 cccagaagtctacattgaaagtctgatatcaccttgttcttaatgttagga 289  Q
    ||||||||||| || | | ||| ||||||||||||||||||||||||||||    
T  12133309 cccagaagtctgcactaagagtttgatatcaccttgttcttaatgttagga 12133359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 2476655 - 2476688
Alignment:
Q  15 tatggaaataaagaatcttggactaaattgtaca 48  Q
    |||||||||||||| |||||||||||||||||||    
T  2476655 tatggaaataaagagtcttggactaaattgtaca 2476688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 3754618 - 3754651
Alignment:
Q  12 gaatatggaaataaagaatcttggactaaattgt 45  Q
    ||||||||||||||||| ||||||||||||||||    
T  3754618 gaatatggaaataaagagtcttggactaaattgt 3754651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 4157977 - 4157944
Alignment:
Q  12 gaatatggaaataaagaatcttggactaaattgt 45  Q
    ||||||||||||||||| ||||||||||||||||    
T  4157977 gaatatggaaataaagagtcttggactaaattgt 4157944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 7432087 - 7432054
Alignment:
Q  12 gaatatggaaataaagaatcttggactaaattgt 45  Q
    |||||||||||||||||||| |||||||||||||    
T  7432087 gaatatggaaataaagaatcgtggactaaattgt 7432054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 7942728 - 7942773
Alignment:
Q  243 gaagtctacattgaaagtctgatatcaccttgttcttaatgttagg 288  Q
    |||||||||||| | ||| ||||||||||||| |||||||||||||    
T  7942728 gaagtctacattaagagtttgatatcaccttgctcttaatgttagg 7942773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 23197030 - 23197063
Alignment:
Q  12 gaatatggaaataaagaatcttggactaaattgt 45  Q
    |||||||||||| |||||||||||||||||||||    
T  23197030 gaatatggaaatgaagaatcttggactaaattgt 23197063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 956612 - 956652
Alignment:
Q  243 gaagtctacattgaaagtctgatatcaccttgttcttaatg 283  Q
    ||||||| | |||||||| ||||||||||||||||||||||    
T  956612 gaagtctgctttgaaagtttgatatcaccttgttcttaatg 956652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 1438225 - 1438269
Alignment:
Q  240 ccagaagtctacattgaaagtctgatatcaccttgttcttaatgt 284  Q
    |||||||||||| |||| ||| ||||||||||||||| |||||||    
T  1438225 ccagaagtctacgttgagagtttgatatcaccttgtttttaatgt 1438269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 7334266 - 7334230
Alignment:
Q  18 ggaaataaagaatcttggactaaattgtacagtattc 54  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  7334266 ggaaataaagagtcttggactaaattgtacactattc 7334230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 289
Target Start/End: Original strand, 12218280 - 12218316
Alignment:
Q  253 ttgaaagtctgatatcaccttgttcttaatgttagga 289  Q
    |||| ||| ||||||||||||||||||||||||||||    
T  12218280 ttgagagtttgatatcaccttgttcttaatgttagga 12218316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 13498242 - 13498278
Alignment:
Q  12 gaatatggaaataaagaatcttggactaaattgtaca 48  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  13498242 gaatatggaaataaagagtcttggactaaattataca 13498278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 43992197 - 43992245
Alignment:
Q  237 gacccagaagtctacattgaaagtctgatatcaccttgttcttaatgtt 285  Q
    ||||| ||||| ||| |||| ||| ||||||||||||||||||||||||    
T  43992197 gaccctgaagtttacgttgagagtttgatatcaccttgttcttaatgtt 43992245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 2369 - 2420
Alignment:
Q  235 tggacccagaagtctacattgaaagtctgatatcaccttgttcttaatgtta 286  Q
    |||| ||||||||||||||||| ||||| ||||||||||||| |||||||||    
T  2369 tggagccagaagtctacattgagagtctaatatcaccttgtttttaatgtta 2420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 2247 - 2349
Alignment:
Q  107 tgaggatgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacgattccaaaaatggtatcttgaagattcctgag 206  Q
    |||| |||| |||||||| || | |||| ||||||||| |  |||||  |||||||||||||||||||||| |||||  |||| |||||| | || ||||    
T  2247 tgagaatgaccaactgcttatggactttaatgagttgggacattacagtttgaagttggttgtttacgatttcaaaagcggtaccttgaaaactcatgag 2346  T
Q  207 att 209  Q
    |||    
T  2347 att 2349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 235 - 286
Target Start/End: Original strand, 4864 - 4915
Alignment:
Q  235 tggacccagaagtctacattgaaagtctgatatcaccttgttcttaatgtta 286  Q
    |||| ||||||||||||||||| ||||| ||||||||||||| |||||||||    
T  4864 tggagccagaagtctacattgagagtctaatatcaccttgtttttaatgtta 4915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 209
Target Start/End: Original strand, 4742 - 4844
Alignment:
Q  107 tgaggatgaacaactgctgattggcttttatgagttggaaagttacaaattgaagttggttgtttacgattccaaaaatggtatcttgaagattcctgag 206  Q
    |||| |||| |||||||| || | |||| ||||||||| |  |||||  |||||||||||||||||||||| |||||  |||| |||||| | || ||||    
T  4742 tgagaatgaccaactgcttatggactttaatgagttgggacattacagtttgaagttggttgtttacgatttcaaaagcggtaccttgaaaactcatgag 4841  T
Q  207 att 209  Q
    |||    
T  4842 att 4844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 23644651 - 23644696
Alignment:
Q  242 agaagtctacattgaaagtctgatatcaccttgttcttaatgttag 287  Q
    |||||||| | |||||||| ||||||||||||||||||||||||||    
T  23644651 agaagtctgcgttgaaagtttgatatcaccttgttcttaatgttag 23644696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 23766897 - 23766862
Alignment:
Q  10 aagaatatggaaataaagaatcttggactaaattgt 45  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23766897 aagaatatggaaataaagagtcttggactaaattgt 23766862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 23816745 - 23816710
Alignment:
Q  10 aagaatatggaaataaagaatcttggactaaattgt 45  Q
    ||||||||||||||||||| ||||||||||||||||    
T  23816745 aagaatatggaaataaagagtcttggactaaattgt 23816710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 23769462 - 23769428
Alignment:
Q  253 ttgaaagtctgatatcaccttgttcttaatgttag 287  Q
    |||||||| ||||||||||||||||||||||||||    
T  23769462 ttgaaagtttgatatcaccttgttcttaatgttag 23769428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 287
Target Start/End: Complemental strand, 23819310 - 23819276
Alignment:
Q  253 ttgaaagtctgatatcaccttgttcttaatgttag 287  Q
    |||||||| ||||||||||||||||||||||||||    
T  23819310 ttgaaagtttgatatcaccttgttcttaatgttag 23819276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 287
Target Start/End: Original strand, 23732387 - 23732432
Alignment:
Q  242 agaagtctacattgaaagtctgatatcaccttgttcttaatgttag 287  Q
    |||||||| | |||||||| |||||| |||||||||||||||||||    
T  23732387 agaagtctgcgttgaaagtttgatattaccttgttcttaatgttag 23732432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 287
Target Start/End: Complemental strand, 23813923 - 23813878
Alignment:
Q  242 agaagtctacattgaaagtctgatatcaccttgttcttaatgttag 287  Q
    |||||||| | | |||||| ||||||||||||||||||||||||||    
T  23813923 agaagtctgcgtcgaaagtttgatatcaccttgttcttaatgttag 23813878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 51381490 - 51381446
Alignment:
Q  10 aagaatatggaaataaagaatcttggactaaattgtacagtattc 54  Q
    |||||||||||||| |||| |||||||||||||||| ||||||||    
T  51381490 aagaatatggaaatgaagagtcttggactaaattgttcagtattc 51381446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 27756027 - 27756076
Alignment:
Q  292 ctatgatatgcaacttgaacatgagattcaactgcaacatatatatcgtt 341  Q
    ||||||||||  |||||| ||||||||||||||||||||| ||| |||||    
T  27756027 ctatgatatgtcacttgagcatgagattcaactgcaacatgtatttcgtt 27756076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 423
Target Start/End: Original strand, 42447112 - 42447171
Alignment:
Q  363 ttattaagaaccttatcagtttcagtaaattagccaaagaccactagattattttgagttc 423  Q
    ||||||| || |||| || |||||||||| ||||||||||||||||| ||| |||||||||    
T  42447112 ttattaaaaatcttaccaatttcagtaaaatagccaaagaccactag-ttaatttgagttc 42447171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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