View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_21 (Length: 440)
Name: NF7494_low_21
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 3 - 417
Target Start/End: Complemental strand, 36944939 - 36944524
Alignment:
| Q |
3 |
gtttgatacctaataaactttacataaagttgaaattcaaagacataaaattcttaatggtactaaccgagcgggtccggcggggagggttttcgaaaaa |
102 |
Q |
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| T |
36944939 |
gtttgatgcctaataaactttacataaagttgaaattcaaagacataaaattcttaatggtactaaccaggagggtccggaggggagggttttcgaaaaa |
36944840 |
T |
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| Q |
103 |
tcgatgaagtaaatggaagaaatagaggacattgagatgagagagctttaggtttaatcactacatacattatcttgatcgtaggatgagactgcatgat |
202 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
36944839 |
tcgatgaagtaaatagaagaaatagaagacattgagatgagagagctttaggtttaatcactacatacatcatcttgattgtaggatgagactgcatgat |
36944740 |
T |
|
| Q |
203 |
ttgagctcctgcctaccatgactagtgtggagacgacaattggatacattaaatagtattctgccattttacgtccacacattaaatgatatacatatcc |
302 |
Q |
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| T |
36944739 |
ttgggctcctgcctgccatgactagtgtggagatgacaattggatacattaaatggtattctgccatttcacatccacacattaaatgatatacatatcc |
36944640 |
T |
|
| Q |
303 |
cgaggccacctgagcagcggacccgtgatc-acgttgatgctgagcagcagggagactaccaaaatgtgtcaatttatactccacaatttacctttgaaa |
401 |
Q |
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|||| ||||||||||||||||||||||||| | ||||||| |||||||||||||||| ||||||||||||||||||||| | ||||||| ||||| ||| |
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| T |
36944639 |
cgagaccacctgagcagcggacccgtgatcaaggttgatgttgagcagcagggagaccgccaaaatgtgtcaatttatacactacaatttgcctttaaaa |
36944540 |
T |
|
| Q |
402 |
ataatcttcaaagggg |
417 |
Q |
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| T |
36944539 |
ataatcttcaaggggg |
36944524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 151
Target Start/End: Complemental strand, 7182368 - 7182301
Alignment:
| Q |
84 |
ggggagggttttcgaaaaatcgatgaagtaaatggaagaaatagaggacattgagatgagagagcttt |
151 |
Q |
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| T |
7182368 |
ggggagggttttggaaaaaaggaaggagcaagtggaagaaatagaagacattgagaggagagagcttt |
7182301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 19644206 - 19644272
Alignment:
| Q |
85 |
gggagggttttcgaaaaatcgatgaagtaaatggaagaaatagaggacattgagatgagagagcttt |
151 |
Q |
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| T |
19644206 |
gggagggttttggaaaaaaggaaggagcaagtggaagaaatacaagacattgagatgagagagcttt |
19644272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 31178423 - 31178371
Alignment:
| Q |
84 |
ggggagggttttcgaaaaatcgatgaagtaaatggaagaaatagaggacattg |
136 |
Q |
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|||||||||||| ||||| || ||||||||||||||||||||| ||||||| |
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| T |
31178423 |
ggggagggttttgaaaaaaatgaagaagtaaatggaagaaatagaagacattg |
31178371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 11522343 - 11522291
Alignment:
| Q |
84 |
ggggagggttttcgaaaaatcgatgaagtaaatggaagaaatagaggacattg |
136 |
Q |
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|||||||||||| ||||| || | ||||||||||||||||||||||||||| |
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| T |
11522343 |
ggggagggttttgaaaaaaaggaaggagtaaatggaagaaatagaggacattg |
11522291 |
T |
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