View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7494_low_26 (Length: 399)
Name: NF7494_low_26
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 13 - 381
Target Start/End: Original strand, 24241707 - 24242075
Alignment:
| Q |
13 |
aaaataatgttgatggttattattacacgtacccataagtcgtgttttcattttacttcaatgagtttttcagaaaagtttatagataaatgttcaattg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24241707 |
aaaataatgttgatggttattattacacgtacacataagtcgtgttttcattttacttcaatgagtttttcagaaaagtttatagataaatgttcaattg |
24241806 |
T |
|
| Q |
113 |
agttaattattcaaactcactacttgtaatctatgtgggagactagagaccagatccaaatttcatgtgggagtgttgcttacctgatttggagacattt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24241807 |
agttaattattcaaactcactacttgtaatctatgtgggagactagagaccagatccaaatttcatgtgggagtgttgcttacctgatttggagacattt |
24241906 |
T |
|
| Q |
213 |
cttctttctagaaaaagatttgatatgaagacacttgagataccatattgaagtatgtgcatttgtaaacagtagtgctattgatcgcgaaagaaaacat |
312 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24241907 |
cttctttctagaaaaagatttgatatggagacacttgagataccatattgaagtatgtgtatttgtaaacagtaatgctattgatcgcgaaagaaaacat |
24242006 |
T |
|
| Q |
313 |
gccgagaacatcgcgaatgattttgaaccgtttgatctaggcctttaattaaaatacatgggtggttgg |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24242007 |
gccgagaacatcgcgaatgattttgaaccgtttgatctaggcctttaattaaaatacatgggtggttgg |
24242075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 288 - 379
Target Start/End: Complemental strand, 3855627 - 3855536
Alignment:
| Q |
288 |
tgctattgatcgcgaaagaaaacatgccgagaacatcgcgaatgattttgaaccgtttgatctaggcctttaattaaaatacatgggtggtt |
379 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
3855627 |
tgctattgatcgcgaaagaaaacatgccaagaacatcgcgaatgattttgaaccgtttgatctagacctttaattacaatacatgggtggtt |
3855536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 359
Target Start/End: Original strand, 47915666 - 47915736
Alignment:
| Q |
288 |
tgctattgatcgcgaaagaaaacatgccgagaacatcgcgaatgattttgaaccgtttgatctaggccttta |
359 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||| |||||||| ||||||||| |||||||||||||| |
|
|
| T |
47915666 |
tgctattgaccgcgaaagaaaacatgtcgagaacatc-tgaatgattctgaaccgttagatctaggccttta |
47915736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University