View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_28 (Length: 384)
Name: NF7494_low_28
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_28 |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 18043441 - 18043253
Alignment:
| Q |
1 |
aactcacttgacaagttgggcattggagatct-tgtgcaccaacttgaggggaagtgttggtgtgagctgtccgttacaagattgtaggagatattttag |
99 |
Q |
| |
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||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18043441 |
aactcacttgataagttgggcattcaagatctctgtgcaccaacttgaggggaagtgttggtgtgagctgtccgttacaagattgtaggagatattttag |
18043342 |
T |
|
| Q |
100 |
gagatatag-tagttattattaatcactctgttttttggttatcttagaaatatggttttgcatgtatatataacctattcctctattg |
187 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18043341 |
gagatatagttggttattattaatcactctgttttttggttatattagaaatatggtttggcatgtatatataacctattcctctattg |
18043253 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 18037225 - 18037172
Alignment:
| Q |
198 |
tgaaagaataagaaataattgtatatcagtttgacaatagcctcaagaatcctg |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
18037225 |
tgaaagaataagaaataattgtatatcagtttgacaatagcctcgagaatcctg |
18037172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 33962650 - 33962797
Alignment:
| Q |
55 |
tgttggtgtgagctgtccgttacaagattgtaggagatattttaggagatatag-tagttattattaatcactctgttttttggttatcttagaaatatg |
153 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| | ||||||||||| |||||||||| |
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| T |
33962650 |
tgttggtgtgagctgtcctttacaagattgtaggagatattttaggagatatagttagtaattattaattactccg-tttttggttatattagaaatatt |
33962748 |
T |
|
| Q |
154 |
gttttgcatgtatatataacctattcctctattgtaacattaactgaaa |
202 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
33962749 |
gttttacatgtatatataacctattcctcttctgtaacatgtactgaaa |
33962797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 6847664 - 6847730
Alignment:
| Q |
1 |
aactcacttgacaagttgggcattggagatct-tgtgcaccaacttgaggggaagtgttggtgtgag |
66 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||| || ||||| ||||| |
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|
| T |
6847664 |
aactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagcgttggcgtgag |
6847730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 234
Target Start/End: Original strand, 22971527 - 22971645
Alignment:
| Q |
114 |
attattaatcactctgttttttggttatcttagaaatatggttttgcatgtatatataacctattcctctattgtaacattaactgaaagaataagaaat |
213 |
Q |
| |
|
||||||||| ||||| ||||| | |||| ||||||||| |||||| | ||||||||| || || |||| |||||| ||| || |||| |||||||||| |
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|
| T |
22971527 |
attattaattactctatttttag-ttatattagaaatagggttttacgtgtatatatgacagatgcctcc-ttgtaagattgacagaaataataagaaat |
22971624 |
T |
|
| Q |
214 |
aattgtatatcagtttgacaa |
234 |
Q |
| |
|
||| ||||||||||| |||| |
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|
| T |
22971625 |
aatcttatatcagtttcacaa |
22971645 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 38460124 - 38459989
Alignment:
| Q |
1 |
aactcacttgacaagttgggcattggagatct-tgtgcaccaacttgaggggaagtgttggtgtgagctgtccgttacaagattgtaggagatattttag |
99 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| | |
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|
| T |
38460124 |
aactcacttgacaagttgggtattcgagatctctatgcaccaacttgagggggagtgttggtgtgagctgtcctttacaagattgtaggagatatttttg |
38460025 |
T |
|
| Q |
100 |
gagatatag-tagttattattaatcactctgttttt |
134 |
Q |
| |
|
||||||||| |||| ||||||||| |||| |||||| |
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|
| T |
38460024 |
gagatatagttagtaattattaattactccgttttt |
38459989 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 38462518 - 38462334
Alignment:
| Q |
53 |
agtgttggtgtgagctgtccgttacaagattgtaggagatattttaggagatatag-tagttattattaatcactctgttttttggttatcttagaaata |
151 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||||| |||| | ||||||||||| ||||||||| |
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| T |
38462518 |
agtgttggtgtgagctgtcctttacaagattgtaggagatatttttggagatatagttagtaattattaattactccg-tttttggttatattagaaata |
38462420 |
T |
|
| Q |
152 |
tggttttgcatgtatatataacc-tattcctctattgtaacattaactgaa---agaataagaaataattgtatatcagtttgaca |
233 |
Q |
| |
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| ||||| |||||||||||||| ||||| ||| |||||||||||| ||| ||||| ||||||| | ||||||||||||||| |
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|
| T |
38462419 |
ttgttttagatgtatatataaccttattcatcttctgtaacattaaccgaaaatagaatgagaaatactgatatatcagtttgaca |
38462334 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 55 - 217
Target Start/End: Complemental strand, 1599981 - 1599819
Alignment:
| Q |
55 |
tgttggtgtgagctgtccgttacaagattgtaggagatattttaggagatatag-tagttattattaatcactctgttttttggttatcttagaaatatg |
153 |
Q |
| |
|
|||||||| || |||||| |||||||| |||||||||||||||||||||||||| |||| ||||||||| |||| |||||||| ||| ||||| ||||| |
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| T |
1599981 |
tgttggtgagaactgtcctttacaagactgtaggagatattttaggagatatagttagtaattattaattactc-gttttttgttta--ttagagatatg |
1599885 |
T |
|
| Q |
154 |
gttttgcatgtatatataacctattcctctattgtaacattaactgaa--agaataagaaataatt |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||| |
|
|
| T |
1599884 |
gttttatatgtatatataacctattcctcttctgtaacattaactaaaatagaatgagaaataatt |
1599819 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 47805093 - 47805159
Alignment:
| Q |
1 |
aactcacttgacaagttgggcattggagatct-tgtgcaccaacttgaggggaagtgttggtgtgag |
66 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
47805093 |
aactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgag |
47805159 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 55 - 231
Target Start/End: Complemental strand, 32225604 - 32225425
Alignment:
| Q |
55 |
tgttggtgtgagctgtccgttacaagattgtaggagatattttaggagatatag-tagttattattaatcactctgttttttggttatcttagaaatatg |
153 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||| ||||||||| |||| ||||||||| |||| | ||||||||||| || ||||||| |
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|
| T |
32225604 |
tgttggtgtgagctgtcctttacacgattgtaggagatatttttagagatatagttagtaattattaattactccg-tttttggttatatttgaaatatt |
32225506 |
T |
|
| Q |
154 |
gttttgcatgtatatataacc-tattcctctattgtaacattaactgaa--agaataagaaataattgtatatcagtttga |
231 |
Q |
| |
|
||||| |||||||||||||| | ||||||| |||||||||||||||| ||||| ||||||| | ||||||||||||| |
|
|
| T |
32225505 |
gttttagatgtatatataaccttgttcctcttctgtaacattaactgaaatagaatgagaaatattgatatatcagtttga |
32225425 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21264521 - 21264587
Alignment:
| Q |
1 |
aactcacttgacaagttgggcattggagatct-tgtgcaccaacttgaggggaagtgttggtgtgag |
66 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
21264521 |
aactcacttgacaagttgggcattcagaatctctgtgcaccaacttgagggggagtgttggcgtgag |
21264587 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 233
Target Start/End: Original strand, 55488 - 55669
Alignment:
| Q |
55 |
tgttggtgtgagctgtccgttacaagattgtaggagatattttaggagatatag-tagttattattaatcactctgttttttggttatcttagaaatatg |
153 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| ||||||||| |||| |||||| ||||| ||||||| ||| |
|
|
| T |
55488 |
tgttggtgtgagctgtcctttacaagattgtagaagatattttaggagatatagttagtaattattaattactccctttttt-gttatattagaaacatg |
55586 |
T |
|
| Q |
154 |
gttttgcatgtatatataaccta-ttcctctattgtaacattaa--ctgaaagaataagaaataattgtatatcagtttgaca |
233 |
Q |
| |
|
||||| ||||||||||| || | ||||||| ||||||||| | |||||||| |||||| || |||||||||||||||| |
|
|
| T |
55587 |
gttttacatgtatatattactgatttcctcttctgtaacattgatcgagaaagaatgagaaattatggtatatcagtttgaca |
55669 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 522561 - 522493
Alignment:
| Q |
3 |
ctcacttgacaagttgggcattggagatct-tgtgcaccaacttgaggggaagtgttggtgtgagctgt |
70 |
Q |
| |
|
||||||||||||||| |||||| ||| | | ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
522561 |
ctcacttgacaagttaggcattaatgatatctatgcaccaacttgagggggagtgttggtgtgagctgt |
522493 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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