View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_31 (Length: 375)
Name: NF7494_low_31
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 367
Target Start/End: Original strand, 50122442 - 50122809
Alignment:
| Q |
19 |
gtttgtactttctgtaatcacattttggtttgtcaaatgtgattagaccataaattgttatgtttggattttagaattgattcc---------------- |
102 |
Q |
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| T |
50122442 |
gtttgtactttctgtaatcacattttggtttgtcaaatgtgattagaccataaattattatgtttggactttagaattgattccagtcttaagatcaatt |
50122541 |
T |
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| Q |
103 |
----ctaaaagttcatatttctattttctctcgcaacatagaataaattctcaaatttgttgacataaatacaaaaccaactctgattcgtactatccaa |
198 |
Q |
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| T |
50122542 |
ctacctaaaagttcatatttctattttctctcgcaacatagaataaattctcaaatttgttgacataaatacaaaaccaactctgattcgtactatccaa |
50122641 |
T |
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| Q |
199 |
acataaattgatatagttatttttgtgcaaatttattcaaatataaattattttacattcagctaattttcaatcaaaatcaatttttgttcgttaagag |
298 |
Q |
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| T |
50122642 |
acataaattgatatagttatttttgtgcaaatttattcaaa-attaattattttacattcagctaattttcaatcaaaatcaatttttgttcgttaagag |
50122740 |
T |
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| Q |
299 |
tcaaggatacacttacttgacatagaagcgtaaaagaggaatgtccacgccataaatattgttcttctc |
367 |
Q |
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| T |
50122741 |
tcaaggatacacttacttgacatagaagcttaaaagaggaatgtccacgccataaatattgttcttctc |
50122809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 11458923 - 11458979
Alignment:
| Q |
34 |
aatcacattttggtttgtcaaatgtgattagaccataaattgttatgtttggatttt |
90 |
Q |
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| T |
11458923 |
aatcacattttggttaatcaaacgtgatttgaccataaattgttacgtttggctttt |
11458979 |
T |
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