View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7494_low_32 (Length: 361)

Name: NF7494_low_32
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7494_low_32
NF7494_low_32
[»] chr8 (4 HSPs)
chr8 (149-344)||(10680028-10680223)
chr8 (1-183)||(10680263-10680454)
chr8 (1-44)||(10681935-10681978)
chr8 (1-46)||(4390754-4390799)
[»] chr5 (3 HSPs)
chr5 (1-47)||(34002964-34003010)
chr5 (1-47)||(13828932-13828978)
chr5 (1-35)||(13614818-13614852)
[»] chr1 (5 HSPs)
chr1 (1-47)||(2228110-2228156)
chr1 (1-62)||(46683608-46683670)
chr1 (1-47)||(46683379-46683425)
chr1 (1-35)||(680662-680696)
chr1 (1-47)||(47477311-47477357)
[»] chr4 (6 HSPs)
chr4 (1-47)||(3334700-3334746)
chr4 (1-47)||(4349932-4349978)
chr4 (1-47)||(10224431-10224477)
chr4 (1-47)||(23356630-23356676)
chr4 (1-47)||(55514755-55514801)
chr4 (1-33)||(33953075-33953107)
[»] scaffold0586 (2 HSPs)
scaffold0586 (1-46)||(7638-7683)
scaffold0586 (1-46)||(8688-8733)
[»] chr7 (3 HSPs)
chr7 (1-33)||(18655135-18655167)
chr7 (1-44)||(43962768-43962811)
chr7 (1-47)||(46484321-46484367)
[»] scaffold1234 (1 HSPs)
scaffold1234 (1-47)||(1801-1847)
[»] chr3 (2 HSPs)
chr3 (1-47)||(24742776-24742822)
chr3 (2-47)||(13102402-13102447)
[»] chr2 (6 HSPs)
chr2 (1-47)||(14145593-14145639)
chr2 (1-47)||(14146969-14147015)
chr2 (1-35)||(34880447-34880481)
chr2 (1-47)||(36626423-36626469)
chr2 (2-47)||(33373168-33373213)
chr2 (2-47)||(34506375-34506420)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 149 - 344
Target Start/End: Complemental strand, 10680223 - 10680028
Alignment:
Q  149 ccttcttttgtaccgcaccatagcgggggacaaagttttttcctttattctcttaaataaatgagaaatacttttatctttgtcgtttaatctcttcaga 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10680223 ccttcttttgtaccgcaccatagcgggggacaaagttttttcctttattctcttaaataaatgagaaatacttttatctttgtcgtttaatctcttcaga 10680124  T
Q  249 taattctttcaattatctttagtcttttctcagttatctttattttcttcctgctttgcgtgtgtgtgttaggatgatgattacgatgtcactttt 344  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10680123 taattctttcaattatctctagtcttttcccagttatctttattttcttcctgctttgcgtgtgtgtgttaggatgatgattacgatgtcactttt 10680028  T

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Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 10680454 - 10680263
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtattttt----------ggcaaaaactagggcagnnnnnnnnnttctttaattcctctttt 90  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||          ||||||||||||| |||         ||||||||||||||||||    
T  10680454 aaaagtagaacatttatgcaatttttcgaaaaagtgaggtatttttatgtttttttggcaaaaactaggacagaaaaaaaa-ttctttaattcctctttt 10680356  T
Q  91 ggtatgtttgatttgtttaaatatgaaacacaaagcagtacaaatattgaaaatatgtccttcttttgtaccgcaccatagcgggggacaaag 183  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10680355 ggtgtgtttgatttgtttaaatatgaaacacaaagcagtacaaatattggaaatatgtccttcttttgtaccgcaccatagcgggggacaaag 10680263  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10681935 - 10681978
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtattt 44  Q
    |||||||| |||||| |||||||||||||||||||| |||||||    
T  10681935 aaaagtagggcatttctgcaatttttcgaaaaagtggggtattt 10681978  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 4390799 - 4390754
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtattttt 46  Q
    |||||||| ||||||||||||||||| | |||||||||| ||||||    
T  4390799 aaaagtagggcatttatgcaattttttgcaaaagtgaggcattttt 4390754  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34003010 - 34002964
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  34003010 aaaagtagggcatttctgcaatttttcgaaaaagtgaggtatttttg 34002964  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 13828932 - 13828978
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    ||||||||||||||| |||||||||||||||||||| || |||||||    
T  13828932 aaaagtagagcatttttgcaatttttcgaaaaagtggggcatttttg 13828978  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 13614852 - 13614818
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagt 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  13614852 aaaagtagggcatttatgcaatttttcgaaaaagt 13614818  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2228110 - 2228156
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||    
T  2228110 aaaagtagggcatttctgcaatttttcgaaaaagtgaggtatttttg 2228156  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 46683608 - 46683670
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggta-tttttggcaaaaactagggca 62  Q
    |||||||| |||||| |||||||||||||||||||| |||| |||||| ||||||||||||||    
T  46683608 aaaagtagggcatttctgcaatttttcgaaaaagtggggtattttttgacaaaaactagggca 46683670  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46683425 - 46683379
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    |||||||| |||||| |||||||||||||||||||| ||||||||||    
T  46683425 aaaagtagggcatttctgcaatttttcgaaaaagtggggtatttttg 46683379  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 680696 - 680662
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagt 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  680696 aaaagtagggcatttatgcaatttttcgaaaaagt 680662  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 47477357 - 47477311
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    |||||||| ||||||  ||||||||||||||||||| ||||||||||    
T  47477357 aaaagtagggcatttcagcaatttttcgaaaaagtggggtatttttg 47477311  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3334700 - 3334746
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    |||||||| |||||| |||||||||||||||||||| ||||||||||    
T  3334700 aaaagtagggcatttctgcaatttttcgaaaaagtggggtatttttg 3334746  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 4349978 - 4349932
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    ||||||||  ||||| |||||||||||||||||||||| ||||||||    
T  4349978 aaaagtaggacatttctgcaatttttcgaaaaagtgagatatttttg 4349932  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10224477 - 10224431
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    |||||||| ||||||| ||||||||||||||||||| || |||||||    
T  10224477 aaaagtagggcatttacgcaatttttcgaaaaagtggggcatttttg 10224431  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 23356676 - 23356630
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    |||||||| |||||| |||||||||||||||||||| || |||||||    
T  23356676 aaaagtagggcatttttgcaatttttcgaaaaagtggggcatttttg 23356630  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 55514801 - 55514755
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    |||||||| ||||||  ||||||||||||||||||| ||||||||||    
T  55514801 aaaagtagggcatttcagcaatttttcgaaaaagtggggtatttttg 55514755  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33953075 - 33953107
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaa 33  Q
    |||||||| ||||||||||||||||||||||||    
T  33953075 aaaagtagggcatttatgcaatttttcgaaaaa 33953107  T

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Target: scaffold0586 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 7683 - 7638
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtattttt 46  Q
    |||||||| |||||||||||||||||||||||||||| | ||||||    
T  7683 aaaagtagggcatttatgcaatttttcgaaaaagtgaagcattttt 7638  T

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Target: scaffold0586; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 8688 - 8733
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtattttt 46  Q
    |||||||| |||||| ||||||||||||||||||||||| ||||||    
T  8688 aaaagtagggcatttgtgcaatttttcgaaaaagtgaggcattttt 8733  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18655167 - 18655135
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  18655167 aaaagtagagcatttatgcaatttttcgaaaaa 18655135  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 43962811 - 43962768
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtattt 44  Q
    ||||||| ||||||| |||||||||||||||||||| |||||||    
T  43962811 aaaagtaaagcatttctgcaatttttcgaaaaagtggggtattt 43962768  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 46484367 - 46484321
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    |||||||| ||||||||||||||||| | |||| |||||||||||||    
T  46484367 aaaagtagggcatttatgcaattttttgcaaaaatgaggtatttttg 46484321  T

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Target: scaffold1234 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1234
Description:

Target: scaffold1234; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 1847 - 1801
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    |||||||| |||||| |||||||||||||||||||| || |||||||    
T  1847 aaaagtagggcatttttgcaatttttcgaaaaagtggggcatttttg 1801  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 24742822 - 24742776
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    |||||||| |||||| || ||||||||||||||||| ||||||||||    
T  24742822 aaaagtagggcatttgtgtaatttttcgaaaaagtggggtatttttg 24742776  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 13102447 - 13102402
Alignment:
Q  2 aaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    ||||||| |||||| |||||||||| |||||||||||| |||||||    
T  13102447 aaagtagggcatttgtgcaattttttgaaaaagtgaggcatttttg 13102402  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 14145639 - 14145593
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    ||||||||  ||||| |||||||||||||||||||| ||||||||||    
T  14145639 aaaagtaggccatttctgcaatttttcgaaaaagtggggtatttttg 14145593  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 14146969 - 14147015
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    |||||||| |||||| ||| |||||||||||||||| ||||||||||    
T  14146969 aaaagtagggcatttctgccatttttcgaaaaagtggggtatttttg 14147015  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 34880447 - 34880481
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagt 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  34880447 aaaagtagggcatttatgcaatttttcgaaaaagt 34880481  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 36626469 - 36626423
Alignment:
Q  1 aaaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    |||||||| ||||||||||||||||| | |||||||||| |||||||    
T  36626469 aaaagtagggcatttatgcaattttttgcaaaagtgaggcatttttg 36626423  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 33373168 - 33373213
Alignment:
Q  2 aaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    ||||||| ||||||| ||||||||||||||||||| || |||||||    
T  33373168 aaagtagggcatttacgcaatttttcgaaaaagtggggcatttttg 33373213  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 47
Target Start/End: Complemental strand, 34506420 - 34506375
Alignment:
Q  2 aaagtagagcatttatgcaatttttcgaaaaagtgaggtatttttg 47  Q
    ||||||| ||||||  |||||||||||||||||| |||||||||||    
T  34506420 aaagtagggcatttgggcaatttttcgaaaaagtaaggtatttttg 34506375  T

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