View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_33 (Length: 356)
Name: NF7494_low_33
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 4720983 - 4721319
Alignment:
| Q |
1 |
agagaagagtccgagtagcaaacctgaattgagaagacccatgttcttggatagatataagccacaatgtatggcaaggatctcagcatgaagaatttcc |
100 |
Q |
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| T |
4720983 |
agagaagagtccgagtagcaaacctgaattgagaagacccatgttcttggatagatataagccacaatgtatggcaaggatctcagcatgaagaatttcc |
4721082 |
T |
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| Q |
101 |
ttggaatctgaaatgaagccagaaaaggcaacaatccaaacaccagctgaattgcgggttacatctccgaatccagcctgagtgggaagccaatgcaact |
200 |
Q |
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| T |
4721083 |
ttggaatctgaaatgaagccagaaaagccaacaatccaaacaccagctgaattgcgggttacatctccgaatccagcctgggtgggaagccaatgcaact |
4721182 |
T |
|
| Q |
201 |
accatcaacattgatgattgtgaaacagaagttgtgggaattccatttaacaaacctatcttcaatggagcggtaattagtgttgttgaaataagtgaga |
300 |
Q |
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| T |
4721183 |
accatcaacattgatgattgtgaaacagaagttgtgggaattccatttaacaaacctatcttcaatggagcggtaatcagtgttgttgaaataagtgaga |
4721282 |
T |
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| Q |
301 |
aaagtttcagacaagaagcgggcagccaaggacaagc |
337 |
Q |
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| T |
4721283 |
aaattttcagacaagaagcgggcagccaaggacaagc |
4721319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 32 - 210
Target Start/End: Original strand, 4711797 - 4711976
Alignment:
| Q |
32 |
agaagacccatgttcttggatagatataagccacaatgtatggcaaggatctcagcatgaagaatttccttggaatctgaaatgaagccagaaaaggc-a |
130 |
Q |
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| T |
4711797 |
agaagacccatgttcttggttagagataatccacaatgcatggaaaggagttcatcatgaagaatgtccttagaatatgaaatgaagcca-aaaaggcga |
4711895 |
T |
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| Q |
131 |
acaatccaaacaccagctgaattgcgggttacatctccgaatccagcctgagt-gggaagccaatgcaactaccatcaaca |
210 |
Q |
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| T |
4711896 |
gcaatccaaacactagttgaattgcggattacacctctaaatctagctcgagtggggcagccaaagcaaccaccatcaaca |
4711976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 337
Target Start/End: Original strand, 4712021 - 4712059
Alignment:
| Q |
299 |
gaaaagtttcagacaagaagcgggcagccaaggacaagc |
337 |
Q |
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| T |
4712021 |
gaaaagtttcagacaaggagcaggcagccaaggacaagc |
4712059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 188 - 289
Target Start/End: Original strand, 47465754 - 47465855
Alignment:
| Q |
188 |
agccaatgcaactaccatcaacattgatgattgtgaaacagaagttgtgggaattccatttaacaaacctatcttcaatggagcggtaattagtgttgtt |
287 |
Q |
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|||||||||||||| |||||||||| ||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||| || || ||||||||| |
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| T |
47465754 |
agccaatgcaactatcatcaacattaatgattgtgcaagagaagttatgggaatttcatttaacaaacctatcttcaatggagtagttatgagtgttgtt |
47465853 |
T |
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| Q |
288 |
ga |
289 |
Q |
| |
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|| |
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| T |
47465854 |
ga |
47465855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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