View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_35 (Length: 345)
Name: NF7494_low_35
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_35 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 29809718 - 29809391
Alignment:
| Q |
19 |
tttaaacataacaaatgatttagcttccacttgaggtaatcaaattcaaacaaaggataataaaatttcaagcaccaaaatatctaaacttcaacatttt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29809718 |
tttaaacataacaaatgatttagcttccacttgaggtaatcaaattcaaacaaaggataataaaatttcaagcaccaaaatatctaaacttcaacctttt |
29809619 |
T |
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| Q |
119 |
caattaaagattgaagaagaactcccttataagtgaagattctcccatttctttcattccaataattttattcaacctttnnnnnnngtataaatttcaa |
218 |
Q |
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| T |
29809618 |
caattaaagattgaagaagaactcccttataagtgaagattctcccatttctctccttccaataattttattcaacctttaaaaaaattataaatttcaa |
29809519 |
T |
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| Q |
219 |
aaatcaccaaccacgctttggttctcagaatgaaaatgcaattgataaaggcc-aaaatagaacaagccaagaacattctttgagaatgacatgggacac |
317 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
29809518 |
aaatcaccaaccacgctttggttctcaaaatgaaaatgcaattgataaaggccaaaaatagaacaagcaaacaacattctttgagaatgacatgggacac |
29809419 |
T |
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| Q |
318 |
atcatttcccactagagtaaaccttctc |
345 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29809418 |
atcatttcccactagagtaaaccttctc |
29809391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 20995158 - 20995268
Alignment:
| Q |
52 |
aggtaatcaaattcaaacaaaggataataaaatttcaagcaccaaaatatctaaacttcaacattttcaattaaagattgaagaagaactcccttataag |
151 |
Q |
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||||||||||| ||||||||||||||| | ||||||| ||||||||| ||| |||| ||| ||||| ||||||||||||||||| || |||||| || |
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| T |
20995158 |
aggtaatcaaactcaaacaaaggataactagatttcaaccaccaaaatgtctggactttaaccttttcggttaaagattgaagaagagcttccttatgag |
20995257 |
T |
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| Q |
152 |
tgaagattctc |
162 |
Q |
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|||| |||||| |
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| T |
20995258 |
tgaaaattctc |
20995268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 44118008 - 44117889
Alignment:
| Q |
19 |
tttaaacataacaaatgatttagcttccacttgaggtaatcaaattcaaacaaaggataataaaatttcaagcaccaaaatatctaaacttcaacatttt |
118 |
Q |
| |
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|||||||| |||| |||||||| | ||||| | || |||| || ||||| ||| |||||||| ||||||| |||||||| ||| ||||| ||| |||| |
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| T |
44118008 |
tttaaacacaacagatgatttaacctccacgttagataatttaactcaaataaaagataataagatttcaaccaccaaaacgtctgaactttaacctttt |
44117909 |
T |
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| Q |
119 |
caattaaagattgaagaaga |
138 |
Q |
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|||||||||||||||||||| |
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| T |
44117908 |
caattaaagattgaagaaga |
44117889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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