View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7494_low_38 (Length: 335)
Name: NF7494_low_38
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 25 - 326
Target Start/End: Complemental strand, 46472335 - 46472034
Alignment:
| Q |
25 |
agaagttcctttagttagttctctagctacaatattgtaataaacaatggcttcataattgtcaattatatgcaagtaaactttcatagttaatatacta |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46472335 |
agaagttcctttagttagttctctagctacaatattgtaataaacaatggcttcataattgtcaattatatgcaagtaaactttcatagttaatatacta |
46472236 |
T |
|
| Q |
125 |
tttcatatacatctcaaaatgcatttgatctgatttattattctcgaaaacaaccttatattattgtaagtagtcaaaatctgtagcaggaagcctcaca |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46472235 |
tttcatatacatctcaaaatgcatttgatctgatttattattctcgaaaacaaccttatattattgtaagtagtcaaaatctgtagcaggaagcctcaca |
46472136 |
T |
|
| Q |
225 |
aagaactaccaagatgaatacattaagaaacatatttctggaaatggatgagctagttcaatatgcactccacttcctatacacttgatctttgatattc |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46472135 |
aagaactaccaagatgaatacattaagaaacatatttctggaaatggatgagctagttcaatatgcactccacttcctatacacttgatctttgatattc |
46472036 |
T |
|
| Q |
325 |
tt |
326 |
Q |
| |
|
|| |
|
|
| T |
46472035 |
tt |
46472034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University