View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7494_low_41 (Length: 320)
Name: NF7494_low_41
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_41 |
 | |
|
| [»] scaffold0576 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 1655824 - 1655528
Alignment:
| Q |
8 |
tggtgttggtcttagtggttgctgtacttattttaatgatcatcaaaaataatgaattgttagttaattgtcattctgattcttgtctgcaaaatataga |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1655824 |
tggtgttggtcttagtggttgctatacttattttaatgatcatcacaaataatgaattgttagttaattgtcattctgattcttgtctgcaaaatataga |
1655725 |
T |
|
| Q |
108 |
attcttcagttgtggttcattattatttttatttttaggatttgtttgcaaaacactagaattgaattgttattcatgtgacaccttaagattagtggcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1655724 |
attcttcagttgtggttcattattatttttatttttaggatttgtttgcaaaacactagaattgaattgttattcatgtgacaccttaagattagtggcc |
1655625 |
T |
|
| Q |
208 |
actaggaagacatcctccactgaatctatgacagccaccaagttcctttaaatgtgttcctagtgccgtatatacttttctatcactgtacaatgtt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1655624 |
actaggaagacatcctccactgaatctatgacagccaccaagttcctttaaatgtgttcccagtgccatatatacttttctatcactgtacaatgtt |
1655528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 7406582 - 7406882
Alignment:
| Q |
8 |
tggtgttggtcttagtggttgctgtacttattttaatgatcatcaaaaataatgaattgttagttaattgtcattctgattcttgtctgcaaaatataga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7406582 |
tggtgttggtcttagtggttgctgtacttattttaatgatcatcacaaataatgaattgttagttaattgtcattctgattcttgtctgcaaaatataga |
7406681 |
T |
|
| Q |
108 |
attcttcagttgtggttcattattatttttatttttaggatttgtttgcaaaacactagaattgaattgttattcatgtgacaccttaagattagtggcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7406682 |
attcttcagttgtggttcattattatttttatttttaggatttgtttgcaaaacactagaattgaattgttattcatgtgacaccttaagattagtggcc |
7406781 |
T |
|
| Q |
208 |
a----ctaggaagacatcctccactgaatctatgacagccaccaagttcctttaaatgtgttcctagtgccgtatatacttttctatcactgtacaatgt |
303 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
7406782 |
actagctaggaagacatcctccactgaatctatgacaaccaccaagttcctttaaatgtgttcccagtgccatatatacttttctatcactgtacaatgt |
7406881 |
T |
|
| Q |
304 |
t |
304 |
Q |
| |
|
| |
|
|
| T |
7406882 |
t |
7406882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 7395011 - 7395311
Alignment:
| Q |
8 |
tggtgttggtcttagtggttgctgtacttattttaatgatcatcaaaaataatgaattgttagttaattgtcattctgattcttgtctgcaaaatataga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7395011 |
tggtgttggtcttagtggttgctgtacttattttaatgatcatcacaaataatgaattgttagttaattgtcattctgattcttgtctgcaaaatataga |
7395110 |
T |
|
| Q |
108 |
attcttcagttgtggttcattattatttttatttttaggatttgtttgcaaaacactagaattgaattgttattcatgtgacaccttaagattagtggcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7395111 |
attcttcagttgtggttcattattatttttatttttaggatttgtttgcaaaacactagaattgaattgttattcatgtgacaccttaagattagtggcc |
7395210 |
T |
|
| Q |
208 |
a----ctaggaagacatcctccactgaatctatgacagccaccaagttcctttaaatgtgttcctagtgccgtatatacttttctatcactgtacaatgt |
303 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
7395211 |
actagctaggaagacatcctccactgaatctatgactaccaccaagttcctttaaatgtgttcccagtgccatatatacttttctatcactgtacaatgt |
7395310 |
T |
|
| Q |
304 |
t |
304 |
Q |
| |
|
| |
|
|
| T |
7395311 |
t |
7395311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 13846697 - 13846611
Alignment:
| Q |
162 |
actagaattgaattgttattcatgtgacaccttaagattagtggccactaggaagacatcctccactgaatctatgacagccaccaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13846697 |
actagaattgaattgttattcatgtgacaccttaagattagtggccactatgaagacatcctccactgaatctatgatagccaccaa |
13846611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 2550871 - 2550785
Alignment:
| Q |
162 |
actagaattgaattgttattcatgtgacaccttaagattagtggccactaggaagacatcctccactgaatctatgacagccaccaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2550871 |
actagaattgaattgttattcatgtgacgccttaagattagtggccactatgaagacatcctccactgaatctatgatagccaccaa |
2550785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 15362987 - 15362687
Alignment:
| Q |
8 |
tggtgttggtcttagtggttgctgtacttattttaatgatcatcaaaaataatgaattgttagttaattgtcattctgattcttgtctgcaaaatataga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15362987 |
tggtgttggtcttagtggttgctgtacttattttaatgatcatcacaaataatgaattgttagttaattgtcattctgattcttgtctgcaaaatataga |
15362888 |
T |
|
| Q |
108 |
attcttcagttgtggttcattattatttttatttttaggatttgtttgcaaaacactagaattgaattgttattcatgtgacaccttaagattagtggcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15362887 |
attcttcagttgtggttcattattatttttatttttaggatttgtttgcaaaacactagaattgaattgttattcatgtgacaccttaagattagtggcc |
15362788 |
T |
|
| Q |
208 |
a----ctaggaagacatcctccactgaatctatgacagccaccaagttcctttaaatgtgttcctagtgccgtatatacttttctatcactgtacaatgt |
303 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
15362787 |
actagctaggaagacatcctccactgaatctatgacaaccaccaagttcctttaaatgtgttcccagtgccatatatacttttctatcactgtacaatgt |
15362688 |
T |
|
| Q |
304 |
t |
304 |
Q |
| |
|
| |
|
|
| T |
15362687 |
t |
15362687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 175 - 287
Target Start/End: Original strand, 27968419 - 27968531
Alignment:
| Q |
175 |
tgttattcatgtgacaccttaagattagtggccactaggaagacatcctccactgaatctatgacagccaccaagttcctttaaatgtgttcctagtgcc |
274 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||| ||| ||||||||||| ||| || |
|
|
| T |
27968419 |
tgttattcatgtgacaccttaagaaaggtggccactaggaagacttcttccaccgaatctatgacagccaccaagtttcttcaaatgtgttcccagttcc |
27968518 |
T |
|
| Q |
275 |
gtatatacttttc |
287 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27968519 |
atatatacttttc |
27968531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 303
Target Start/End: Original strand, 31341560 - 31341859
Alignment:
| Q |
8 |
tggtgttggtcttagtggttgctgtacttattttaatgatcatcaaaaataatgaattgttagttaattgtcattctgattcttgtctgcaaaatataga |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31341560 |
tggtgttggtcttagtggttgctgtacttattttaatgatcatcacaaataatgaattgttagttaattgtcattctgattcttgtctgcaaaatataga |
31341659 |
T |
|
| Q |
108 |
attcttcagttgtggttcattattatttttatttttaggatttgtttgcaaaacactagaattgaattgttattcatgtgacaccttaagattagtggcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31341660 |
attcttcagttgtggttcattattatttttatttttaggatttgtttgcaaaacactagaattgaaatgttattcatgtgacaccttaagattagtggcc |
31341759 |
T |
|
| Q |
208 |
a----ctaggaagacatcctccactgaatctatgacagccaccaagttcctttaaatgtgttcctagtgccgtatatacttttctatcactgtacaatgt |
303 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
31341760 |
actagctaggaagacatcctccactgaatctatgaccaccaccaagttcctttaaatgtgttcccagtgccatatatacttttctatcactgtacaatgt |
31341859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 7758 - 7585
Alignment:
| Q |
8 |
tggtgttggtcttagtggttgctgtacttattttaatgatcatcaaaaataatgaattgttagttaattgtcattctgattcttgtctgcaaaatataga |
107 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7758 |
tggtgttggtcttagtggttgttgtacttattttaatgatcatcacaaataatgaattgttagttaattgtcattctgattcttgtctgcaaaatataga |
7659 |
T |
|
| Q |
108 |
attcttcagttgtggttcattattatttttatttttaggatttgtttgcaaaacactagaattgaattgttatt |
181 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7658 |
attcttcagttgtggttcgttattatttttatttttaggatttgtttgcaaaacactagaattgaattgttatt |
7585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 175 - 304
Target Start/End: Original strand, 28248064 - 28248193
Alignment:
| Q |
175 |
tgttattcatgtgacaccttaagattagtggccactaggaagacatcctccactgaatctatgacagccaccaagttcctttaaatgtgttcctagtgcc |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
28248064 |
tgttattcatgtgacaccttaagattagtggccactaggaagacatcctccactgaatctatgacagccaccaagttccttcaaatgtgttcccagtgcc |
28248163 |
T |
|
| Q |
275 |
gtatatacttttctatcactgtacaatgtt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28248164 |
atatatacttttctatcactgtacaatgtt |
28248193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 17303373 - 17303285
Alignment:
| Q |
8 |
tggtgttggtcttagtggttgctgtacttattttaatgatcatcaaaaataatgaattgttagttaattgtcattctgattcttgtctg |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17303373 |
tggtgttggtcttagtggttgctgtacttattttaatgatcatcacaaataatgaattgttagttaattgtcattctgattcttgtctg |
17303285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 17303216 - 17303134
Alignment:
| Q |
95 |
tgcaaaatatagaattcttcagttgtggttcattattatttttatttttaggatttgtttgcaaaacactagaattgaattgt |
177 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17303216 |
tgcaaaatatagaattcttcagttttggttcattattatttttatttttaggatttgtttgcaaaacactagaattgaattgt |
17303134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 45355507 - 45355593
Alignment:
| Q |
162 |
actagaattgaattgttattcatgtgacaccttaagattagtggccactaggaagacatcctccactgaatctatgacagccaccaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45355507 |
actagaattgaattgttattcatgtgacaccttaagattagtggccactatgaagacatcctccactgaatctatgatagccaccaa |
45355593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 175 - 299
Target Start/End: Original strand, 5076798 - 5076919
Alignment:
| Q |
175 |
tgttattcatgtgacaccttaagattagtggccactaggaagacatcctccactgaatctatgacagccaccaagttcctttaaatgtgttcctagtgcc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||| |||||| |
|
|
| T |
5076798 |
tgttattcatgtgacaccttaagattagtggccactagga---catcctccactgaatctatgacagccaccaagttccttcaaatgttttcccagtgcc |
5076894 |
T |
|
| Q |
275 |
gtatatacttttctatcactgtaca |
299 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
5076895 |
atatatatttttctatcactgtaca |
5076919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 175 - 299
Target Start/End: Complemental strand, 7412426 - 7412305
Alignment:
| Q |
175 |
tgttattcatgtgacaccttaagattagtggccactaggaagacatcctccactgaatctatgacagccaccaagttcctttaaatgtgttcctagtgcc |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
7412426 |
tgttattcatgtgacaccttaagattagtggccactagga---catcctccactgaatctatgacagccaccaagttccttcaaatgtgttctcagtgcc |
7412330 |
T |
|
| Q |
275 |
gtatatacttttctatcactgtaca |
299 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
7412329 |
atatatactcttctatcactgtaca |
7412305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 43600972 - 43600886
Alignment:
| Q |
162 |
actagaattgaattgttattcatgtgacaccttaagattagtggccactaggaagacatcctccactgaatctatgacagccaccaa |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43600972 |
actagaattgaattgttattcatgtgacaccttaagattagtggccactatgaagacatcctccactgaatctatgatagccaccaa |
43600886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 299
Target Start/End: Complemental strand, 19748276 - 19748202
Alignment:
| Q |
225 |
cactgaatctatgacagccaccaagttcctttaaatgtgttcctagtgccgtatatacttttctatcactgtaca |
299 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||||||| || ||||||||||||||||||| |||| |
|
|
| T |
19748276 |
cactgaatctatgacagcaaccaagttccttcaaatgtgttcctagtaccatatatacttttctatcactataca |
19748202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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