View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7494_low_43 (Length: 310)

Name: NF7494_low_43
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7494_low_43
NF7494_low_43
[»] chr7 (13 HSPs)
chr7 (14-292)||(29098357-29098650)
chr7 (73-259)||(3617388-3617574)
chr7 (73-259)||(29071309-29071495)
chr7 (73-277)||(28956861-28957065)
chr7 (73-259)||(29058081-29058267)
chr7 (73-259)||(3619077-3619263)
chr7 (73-259)||(29068847-29069033)
chr7 (74-279)||(29078043-29078248)
chr7 (73-279)||(29110793-29110999)
chr7 (73-256)||(29073154-29073337)
chr7 (73-256)||(29116262-29116445)
chr7 (73-208)||(29102165-29102300)
chr7 (73-251)||(29066831-29067009)
[»] chr4 (3 HSPs)
chr4 (73-259)||(11851677-11851863)
chr4 (73-259)||(11854391-11854577)
chr4 (73-256)||(11849831-11850014)
[»] chr3 (1 HSPs)
chr3 (83-259)||(24241017-24241187)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 292
Target Start/End: Complemental strand, 29098650 - 29098357
Alignment:
Q  14 aaatgaactaattacaa-tatagaaacaaaaccagaaattaaattcccaacttcagcaacatcaagcatctgaccatgtaat---atcaaggccacccca 109  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||    
T  29098650 aaatgaactaattacaaatatagaaacaaaaccagaaataaaattcccaacttcagcaacatcaagcatctgaccatgtgatgatatcaaggccacccca 29098551  T
Q  110 ttgattttgaggca-caccc----------aatgcttcccatacagccttggaggcatcaactatgttgttgcgataaggaggttggtaatcatgatctt 198  Q
    |||||||||||||| |||||          ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29098550 ttgattttgaggcatcaccccattgatatcaatgcttcccatacaaccttggaggcatcaactatgttgttgcgacaaggaggttggtaatcatgatctt 29098451  T
Q  199 tatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttccatttgcattcactgtaatgttgtgaagacatctact 292  Q
    ||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29098450 tatcacatctcattgtagagtcacgctcatcgactaccatggccaccacacttcttccatttgcattcactgtaatgttgtgaagacatctact 29098357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 73 - 259
Target Start/End: Original strand, 3617388 - 3617574
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||| ||| |||||||| || |||||||| ||||||||  |    
T  3617388 atcaagcatctgaccatgtaatatctaggccaccccattgatcttgaggcacacccaaggctttccacacagccttagaagcatcaacaatgttgtttgg 3617487  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttccatt 259  Q
    | ||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||| ||||||| |||||| |||||||    
T  3617488 acaaggaggttggtaatcatgttcttcatcacatcccattgtagagtcacactcatcaaccaccgtggccactacactttttccatt 3617574  T

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Target: chr7; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 73 - 259
Target Start/End: Original strand, 29071309 - 29071495
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||| ||||||||||| |||||||| ||||||||  |    
T  29071309 atcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgg 29071408  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttccatt 259  Q
    | ||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||| |||||  ||||||| ||||||||||||||    
T  29071409 acaaggaggttggtaatcatgttcttcatcacatcccatcgtagagtcacactcatcaaccacagtggccactacacttcttccatt 29071495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 277
Target Start/End: Complemental strand, 28957065 - 28956861
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| || |||||||| ||||||||||| |||||||| ||||||||  |    
T  28957065 atcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacctaaagcttcccacacagccttggaagcatcaacaatgttgtttgg 28956966  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttccatttgcattcactgta 272  Q
    | ||||||||||||||||||| |||| |||||||||| |||| |||||||| ||||| || |||||||||||||||||| | ||||| ||| | | ||||    
T  28956965 acaaggaggttggtaatcatgttcttcatcacatccctttgtggagtcacactcatcaacaaccatggccaccacacttttcccattcgcactaattgta 28956866  T
Q  273 atgtt 277  Q
    |||||    
T  28956865 atgtt 28956861  T

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Target: chr7; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 73 - 259
Target Start/End: Original strand, 29058081 - 29058267
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||| ||||||||||| |||||||| ||||||||  |    
T  29058081 atcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgg 29058180  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttccatt 259  Q
      |||||||||| |||||||| |||| ||||||||||||||| |||||||| ||||| |||||| ||||||| |||||| |||||||    
T  29058181 gcaaggaggttgataatcatgttcttcatcacatcccattgttgagtcacactcatcaaccaccgtggccactacactttttccatt 29058267  T

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Target: chr7; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 73 - 259
Target Start/End: Complemental strand, 3619263 - 3619077
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    |||||||||| |||||||||||||| |  |||||||||||||  ||||| ||| |||| |||| ||| ||||| || |||||||||||||||||||||      
T  3619263 atcaagcatcagaccatgtaatatccaatccaccccattgatcatgaggaacatccaaggctttccacacagctttagaggcatcaactatgttgttgtt 3619164  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttccatt 259  Q
    | ||||||||||||||||||| ||||||||||||||||| |||||||| || ||||| || ||| |||| |||||||||||||||||    
T  3619163 acaaggaggttggtaatcatgttctttatcacatcccatcgtagagtcgcactcatcaacaaccgtggcaaccacacttcttccatt 3619077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 73 - 259
Target Start/End: Original strand, 29068847 - 29069033
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    |||||||||||||||||||||| ||||||||||||||||| | || |||||||   || |||| ||| ||||||||||| |||||||| ||||| ||  |    
T  29068847 atcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttgg 29068946  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttccatt 259  Q
    | ||||||||||||||||||| | || |||||||||| || | |||||||| ||||| || |||||||||||||||||| |||||||    
T  29068947 acaaggaggttggtaatcatgttgttcatcacatccctttctggagtcacactcatcaacaaccatggccaccacactttttccatt 29069033  T

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Target: chr7; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 74 - 279
Target Start/End: Original strand, 29078043 - 29078248
Alignment:
Q  74 tcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcga 173  Q
    ||||||||||||||||||||| ||||||||||||||||| | || ||||||||| || |||| ||| ||||| ||||| |||||||| ||||||||   |    
T  29078043 tcaagcatctgaccatgtaatgtcaaggccaccccattgttctttaggcacacctaaagctttccacacagctttggaagcatcaacaatgttgtttgta 29078142  T
Q  174 taaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttccatttgcattcactgtaa 273  Q
     |||| |||||||| ||||| | || |||||||||| || |||| || || || ||||| ||||||||||| ||| |||||||||| ||| | | |||||    
T  29078143 caaggtggttggtagtcatgctgttcatcacatccctttctagaatcgcactcgtcgacaaccatggccacgacatttcttccattagcactgattgtaa 29078242  T
Q  274 tgttgt 279  Q
    ||||||    
T  29078243 tgttgt 29078248  T

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Target: chr7; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 73 - 279
Target Start/End: Original strand, 29110793 - 29110999
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    |||||||||||||||||||||||||||| ||||||||||| | || ||||||||| || |||| ||| ||||| ||||| |||||||| ||||||||  |    
T  29110793 atcaagcatctgaccatgtaatatcaagaccaccccattgttctttaggcacacctaaagctttccacacagctttggaagcatcaacaatgttgtttgg 29110892  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttccatttgcattcactgta 272  Q
    | | || |||||||| ||||| | || |||||||||| || |||| || || || || || ||||||||||| ||| |||||||||| ||| | | ||||    
T  29110893 acacggtggttggtagtcatgctgttcatcacatccctttctagaatcgcactcgtcaacaaccatggccacgacatttcttccattagcactgattgta 29110992  T
Q  273 atgttgt 279  Q
    |||||||    
T  29110993 atgttgt 29110999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 256
Target Start/End: Complemental strand, 29073337 - 29073154
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    |||||||||| ||||||||||| || |  |||||||||||||  |||||||||||||| |||| ||| ||||| || |||||||||||||||||||||      
T  29073337 atcaagcatcggaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgtt 29073238  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttcc 256  Q
    | |||||||||| |||||||| |||||||| |||||   | | || ||||| ||||| || ||  |||||||||||||||||||    
T  29073237 acaaggaggttgataatcatgttctttatcgcatcctgctctcgaatcacactcatcaacaactttggccaccacacttcttcc 29073154  T

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Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 256
Target Start/End: Complemental strand, 29116445 - 29116262
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    |||||||||| ||||||||||| || |  |||||||||||||  |||||||||||||| |||| ||| ||||| || |||||||||||||||||||||      
T  29116445 atcaagcatcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgtt 29116346  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttcc 256  Q
    | |||||||||| |||||||| |||||||| |||||   | | || ||||| ||||| || ||  |||||||||||||||||||    
T  29116345 acaaggaggttgataatcatgttctttatcgcatcctgctctcgaatcacactcatcaacaactttggccaccacacttcttcc 29116262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 73 - 208
Target Start/End: Complemental strand, 29102300 - 29102165
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    |||||||||| ||||||||||| || |  |||||||||||||  |||||||||||||| |||| ||| ||||| || |||||||||||||||||||||      
T  29102300 atcaagcatcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgtt 29102201  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcc 208  Q
    | |||||||||| |||||||| |||||||| |||||    
T  29102200 acaaggaggttgataatcatgttctttatcgcatcc 29102165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 251
Target Start/End: Complemental strand, 29067009 - 29066831
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    |||||||||| |||||||||||||| |  ||||||||||||||    || ||||| || |||| ||| |||||| | || |||||||| ||||| |||      
T  29067009 atcaagcatcagaccatgtaatatccaacccaccccattgattccttgggacacctaaggctttccacacagccattgaagcatcaacaatgttattggc 29066910  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacactt 251  Q
    | | |||||||| || ||||| |||  |||||| ||| |||  |||||||||||||| || ||||| || |||||||||    
T  29066909 acatggaggttgatactcatgttctgcatcacacccctttgatgagtcacattcatcaactaccattgcaaccacactt 29066831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 8e-61; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 73 - 259
Target Start/End: Complemental strand, 11851863 - 11851677
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||| ||||||||||| |||||||| ||||||||  |    
T  11851863 atcaagcatctgaccatgtaatgtcaaggccaccccattgatcttgaggcacacccaaggctttccacacagccttggaagcatcaacaatgttgtttgg 11851764  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttccatt 259  Q
    | ||||||||||||||||||| |||| |||||||||||| ||||||||||| ||||| |||||  ||||||||||||||||||||||    
T  11851763 acaaggaggttggtaatcatgttcttcatcacatcccatcgtagagtcacactcatcaaccacagtggccaccacacttcttccatt 11851677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 73 - 259
Target Start/End: Complemental strand, 11854577 - 11854391
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    |||||||||||||||||||||| ||||||||||||||||| | || |||||||   || |||| ||| ||||||||||| |||||||| ||||| ||  |    
T  11854577 atcaagcatctgaccatgtaatgtcaaggccaccccattgctctttaggcacatttaaagctttccacacagccttggaagcatcaacaatgttatttgg 11854478  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttccatt 259  Q
    | ||||||||||||||||||| | || |||||||||| || | |||||||| ||||| || |||||||||||||||||| |||||||    
T  11854477 acaaggaggttggtaatcatgttgttcatcacatccctttctggagtcacactcatcaacaaccatggccaccacactttttccatt 11854391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 256
Target Start/End: Original strand, 11849831 - 11850014
Alignment:
Q  73 atcaagcatctgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcg 172  Q
    |||||||||| ||||||||||| || |  |||||||||||||  |||||||||||||| |||| ||| ||||| || |||||||||||||||||||||      
T  11849831 atcaagcatcagaccatgtaatgtccaatccaccccattgatcatgaggcacacccaaggctttccacacagctttagaggcatcaactatgttgttgtt 11849930  T
Q  173 ataaggaggttggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttcc 256  Q
    | |||||||||| |||||||| |||||||| |||||   | | || ||||| ||||| || ||  |||||||||||||||||||    
T  11849931 acaaggaggttgataatcatgttctttatcgcatcctgctctcgaatcacactcatcaacaactttggccaccacacttcttcc 11850014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 259
Target Start/End: Original strand, 24241017 - 24241187
Alignment:
Q  83 tgaccatgtaatatcaaggccaccccattgattttgaggcacacccaatgcttcccatacagccttggaggcatcaactatgttgttgcgataaggaggt 182  Q
    |||||||||||| |||||  |||||||||  |  ||||||||||| || |||| ||||||| ||||||| || ||||| |||||      | |||||||     
T  24241017 tgaccatgtaatttcaagttcaccccatttgtcatgaggcacacctaaggctttccatacaaccttggaagcctcaacaatgtt------acaaggaggc 24241110  T
Q  183 tggtaatcatgatctttatcacatcccattgtagagtcacattcatcgaccaccatggccaccacacttcttccatt 259  Q
    ||||||||||| |||| |||||||||||||||  ||||||| ||||| || | |||||||||||||||||| |||||    
T  24241111 tggtaatcatgctcttcatcacatcccattgtgaagtcacactcatcaacaaacatggccaccacacttctaccatt 24241187  T

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