View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7494_low_47 (Length: 288)

Name: NF7494_low_47
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7494_low_47
NF7494_low_47
[»] chr1 (8 HSPs)
chr1 (59-288)||(36945026-36945258)
chr1 (16-58)||(43043093-43043135)
chr1 (16-58)||(46887291-46887333)
chr1 (13-58)||(30786705-30786750)
chr1 (16-59)||(46889312-46889355)
chr1 (13-58)||(36729371-36729416)
chr1 (13-57)||(26049269-26049313)
chr1 (13-58)||(20063228-20063273)
[»] chr7 (2 HSPs)
chr7 (13-61)||(4588260-4588308)
chr7 (16-48)||(218402-218434)
[»] chr4 (10 HSPs)
chr4 (13-58)||(54349641-54349686)
chr4 (13-57)||(53019586-53019630)
chr4 (13-59)||(39162791-39162837)
chr4 (16-58)||(55440911-55440953)
chr4 (16-56)||(5555577-5555617)
chr4 (13-56)||(35801756-35801799)
chr4 (16-58)||(46612027-46612069)
chr4 (13-58)||(12571562-12571607)
chr4 (13-60)||(4947715-4947762)
chr4 (15-51)||(24778270-24778306)
[»] chr5 (4 HSPs)
chr5 (16-58)||(21946750-21946792)
chr5 (16-58)||(20506713-20506755)
chr5 (16-60)||(31813138-31813182)
chr5 (13-58)||(33270738-33270783)
[»] chr3 (1 HSPs)
chr3 (16-56)||(39944950-39944990)
[»] scaffold0316 (1 HSPs)
scaffold0316 (16-58)||(11361-11403)
[»] chr2 (7 HSPs)
chr2 (18-60)||(10374454-10374496)
chr2 (16-58)||(27614352-27614394)
chr2 (16-58)||(36558536-36558578)
chr2 (16-58)||(24574459-24574501)
chr2 (18-54)||(10377003-10377039)
chr2 (16-56)||(19259385-19259425)
chr2 (16-58)||(11105533-11105575)
[»] chr8 (3 HSPs)
chr8 (13-58)||(33327513-33327558)
chr8 (13-51)||(24800350-24800388)
chr8 (13-58)||(12230919-12230964)
[»] scaffold0007 (1 HSPs)
scaffold0007 (13-58)||(197680-197725)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 59 - 288
Target Start/End: Complemental strand, 36945258 - 36945026
Alignment:
59 ctacgatatgaagagtaatagtttgtcatcactcttttagatgaaaatgatgtgtttatctcatattatataaatatttgttgacttttgttataaccgc 158  Q
    ||||| |||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
36945258 ctacggtatgaagagtaatagtttgctatcactcttttggatgaaaatgatgtgtttatctcatattatatgaatatttgttgacttttgttataaccgc 36945159  T
159 atgtatcatgtattttttaaatatatttatcttaaagaattgtaattacgtagaattcttactttttcttttgatagaaacaaac---ttcnnnnnnnga 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||        ||    
36945158 atgtatcatgtattttttaaatatatttatcttaaagaattgtaattacgtagaattcttactttttcttttgatagaaacaaactttttttttttttga 36945059  T
256 caaaacaaactcaactcatccccttaaccataa 288  Q
    |||||||||||||||||||||||||||||||||    
36945058 caaaacaaactcaactcatccccttaaccataa 36945026  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 43043135 - 43043093
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
43043135 ataatcatgagttccaccaaatatttcatttttggtgttaaca 43043093  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 46887291 - 46887333
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
46887291 ataatcattagttcgaccaaatatttcatttttggtgttaaca 46887333  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 30786705 - 30786750
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||    
30786705 aatataatcataagttcgactaaatatttcatttttggtgttaaca 30786750  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 46889312 - 46889355
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaacac 59  Q
    |||||||| ||||| |||||||||||||||||||||||||||||    
46889312 ataatcattagttcaaccaaatatttcatttttggtgttaacac 46889355  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 36729416 - 36729371
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||||||    
36729416 aatataatcatgatttcgaccaaatattttatttttggtattaaca 36729371  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 26049313 - 26049269
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaac 57  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||    
26049313 aatataatcatgatttcgaccaaatattttatttttggtattaac 26049269  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 20063228 - 20063273
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    ||||||||||||| ||||||||||||||  ||||||||| ||||||    
20063228 aatataatcatgacttcgaccaaatattatatttttggtattaaca 20063273  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 4588308 - 4588260
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaacacta 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
4588308 aatataatcatgagttcgaccaaatatttcatttttggtgttaacacta 4588260  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 218434 - 218402
Alignment:
16 ataatcatgagttcgaccaaatatttcattttt 48  Q
    |||||||||||||||||||||||||||||||||    
218434 ataatcatgagttcgaccaaatatttcattttt 218402  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 54349641 - 54349686
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
54349641 aatataatcatgagttcgaccaaatatttcatttttggtgttaaca 54349686  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 53019630 - 53019586
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaac 57  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
53019630 aatagaatcatgagttcgaccaaatatttcatttttggtgttaac 53019586  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 39162837 - 39162791
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaacac 59  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||    
39162837 aatataatcatgagttcgacaaaatatttcatttttggtgctaacac 39162791  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 55440953 - 55440911
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
55440953 ataatcgtgagttcgaccaaatatttcatttttggtgttaaca 55440911  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 5555617 - 5555577
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaa 56  Q
    |||||||| ||||||||||||||||||||||||||||||||    
5555617 ataatcattagttcgaccaaatatttcatttttggtgttaa 5555577  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 35801799 - 35801756
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaa 56  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||    
35801799 aatataatcgtgagttcgatcaaatatttcatttttggtgttaa 35801756  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 46612027 - 46612069
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
46612027 ataatcataagttcgaccaaatatttcatttttagtgttaaca 46612069  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 12571562 - 12571607
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    |||| |||||||||||||||||||||||||||||||  ||||||||    
12571562 aatagaatcatgagttcgaccaaatatttcattttttatgttaaca 12571607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 4947715 - 4947762
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaacact 60  Q
    |||||||| ||||||||||| ||||||||||||||||||  |||||||    
4947715 aatataattatgagttcgacaaaatatttcatttttggtactaacact 4947762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Original strand, 24778270 - 24778306
Alignment:
15 tataatcatgagttcgaccaaatatttcatttttggt 51  Q
    ||||||||| | |||||||||||||||||||||||||    
24778270 tataatcataatttcgaccaaatatttcatttttggt 24778306  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 21946792 - 21946750
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    |||||||||||||||||||||||||||||||||||||||||||    
21946792 ataatcatgagttcgaccaaatatttcatttttggtgttaaca 21946750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 20506755 - 20506713
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
20506755 ataatcattagttcgaccaaatatttcatttttggtgttaaca 20506713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 31813182 - 31813138
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaacact 60  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||    
31813182 ataatcgtgagttcgaccaaatatttcatttttgatgttaacact 31813138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 33270783 - 33270738
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||||    
33270783 aatataatcatgagttcgaccaagtattttatttttggtattaaca 33270738  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 39944950 - 39944990
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaa 56  Q
    |||||||||||||||||||||||||||||||||||||||||    
39944950 ataatcatgagttcgaccaaatatttcatttttggtgttaa 39944990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 11361 - 11403
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
11361 ataatcgtgagttcgaccaaatatttcatttttggtgttaaca 11403  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 10374496 - 10374454
Alignment:
18 aatcatgagttcgaccaaatatttcatttttggtgttaacact 60  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
10374496 aatcatgaattcgaccaaatatttcatttttggtgttaacact 10374454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 27614352 - 27614394
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
27614352 ataatcatgagttcgaccaaatattttatttttggtgttaaca 27614394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 36558578 - 36558536
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
36558578 ataatcatgagttcgaccaaatatttcatgtttggtgttaaca 36558536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 24574459 - 24574501
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    |||||||| ||||||||||||||||| ||||||||||||||||    
24574459 ataatcattagttcgaccaaatattttatttttggtgttaaca 24574501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 10377039 - 10377003
Alignment:
18 aatcatgagttcgaccaaatatttcatttttggtgtt 54  Q
    |||||||| ||||||||||||||||||||||||||||    
10377039 aatcatgaattcgaccaaatatttcatttttggtgtt 10377003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 19259385 - 19259425
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaa 56  Q
    |||||||||||||||| |||||||| |||||||||||||||    
19259385 ataatcatgagttcgatcaaatattacatttttggtgttaa 19259425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 11105533 - 11105575
Alignment:
16 ataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
11105533 ataatcatgatttcgaccaaatatttcattttttgtattaaca 11105575  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 33327558 - 33327513
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||    
33327558 aatagaatcatgagttcgaccaaatatttcattttttgtgttaaca 33327513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 24800388 - 24800350
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggt 51  Q
    ||||||||||||||||||||||||||||| |||| ||||    
24800388 aatataatcatgagttcgaccaaatattttatttgtggt 24800350  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 12230964 - 12230919
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    |||| ||| |||||||||||||||||||| |||||| |||||||||    
12230964 aatagaattatgagttcgaccaaatattttattttttgtgttaaca 12230919  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 197725 - 197680
Alignment:
13 aatataatcatgagttcgaccaaatatttcatttttggtgttaaca 58  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||||||    
197725 aatataatcatgacttcgaccaaatattttatttttggtattaaca 197680  T

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