View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7494_low_49 (Length: 270)
Name: NF7494_low_49
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_49 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 9164438 - 9164689
Alignment:
| Q |
1 |
tcaacttcttaggtggtacactaatagatgactttgcttcctcattttcttttcttttcccctttgaagtaggtgttccacgagcaggtcctgttgctgt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9164438 |
tcaacttcttagttggtacactaatagatgactttgcttcctcattttcttttcttttcccctttgaagtaggtgttccacgagcaggtcctgttgctgt |
9164537 |
T |
|
| Q |
101 |
aggttttgaaggactgttgtcaataggttcttccttaggttccttctgctttgtagcagttatagcaggaacaccatcctcgtcatcaacctggacaaat |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9164538 |
aggttttgaaggactgctgtcaataggttcttccttaggttccttctgctttgtagcagttatagcaggaacaccatcctcgtcatcaacctggacaaat |
9164637 |
T |
|
| Q |
201 |
aaaattgatccgctgattaatgaaagatgctgaagtctagttcaagccatat |
252 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9164638 |
aaaattgatccactgattaatgaaagatgctgaagtctagttcaagccatat |
9164689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 9151618 - 9151842
Alignment:
| Q |
5 |
cttcttaggtggtacactaatagatgactttgcttcctcattttcttttcttttccccttt---------gaagtaggtgttccacgagcaggtcctgtt |
95 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9151618 |
cttcttaggtggtacactaatagatggctttgcttcctcgtttgcttttcttttcgcctttgaagactttgaagtaggtgttccacgagcaggtcctgtt |
9151717 |
T |
|
| Q |
96 |
gctgtaggttttgaaggactgttgtcaataggttcttccttaggttccttctgctttgtagcagttatagcaggaacaccatcctcgtcatcaacctgga |
195 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| | |||||||||||| || ||||| |||| || || |
|
|
| T |
9151718 |
gctgtaggttttgaaggactgttatcaacaggttcttccttaggttccttctgcttagtagcagtcacagcaggaacaccgtcttcgtcgtcaatctaga |
9151817 |
T |
|
| Q |
196 |
caaataaaattgatccgctgattaa |
220 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
9151818 |
aaaataaaattgatccgctgattaa |
9151842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 9190840 - 9190713
Alignment:
| Q |
32 |
ctttgcttcctcattttcttttcttttcccctttgaagtaggtgttccacgagcaggtcctgttgctgtaggttttgaaggactgttgtcaataggttct |
131 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||||||| |||||||||||||| ||||| |||||| ||||||||||||||||| | |||| ||||||| |
|
|
| T |
9190840 |
ctttgcttccttgtttgcttttcttttcgcctttgaagcaggtgttccacgagtaggtcatgttgccgtaggttttgaaggactactttcaacaggttct |
9190741 |
T |
|
| Q |
132 |
tccttaggttccttctgctttgtagcag |
159 |
Q |
| |
|
|| |||||||||||||||||| |||||| |
|
|
| T |
9190740 |
tctttaggttccttctgctttctagcag |
9190713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University