View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7494_low_51 (Length: 265)
Name: NF7494_low_51
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_51 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 699895 - 700142
Alignment:
| Q |
1 |
aaaaacagatgcatttaaacctcccatatatgttatatgtttgttaaataatttgaatttgtaattgttaaatatcacacatgcatcgcattcaaactaa |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
699895 |
aaaaaaagatgcatttaaacctcccatatatgtt-tatgtttgttaaataatttgaatttgtaattgttatatatcacaggtgcatcgcattcaaactaa |
699993 |
T |
|
| Q |
101 |
actaaatcgtctcactttttcaagtgggttaaccaaaactcaaatag----tacctcttatattttgtagtaaaaaggttcgagaacaatttaataagta |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
699994 |
actaaatcgtctcactttttcaagtgggttaaccaaaactcaaatagtacatacctcttatattttgtagt-aaaaggttcgagaacaatttaataagta |
700092 |
T |
|
| Q |
197 |
aaagtattatgagaaacattgcattaaatttagcaagatgatgatgatat |
246 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
700093 |
aaagtattatgagaaatattgcattaaatttagcaagatgatgatgatat |
700142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University