View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_57 (Length: 248)
Name: NF7494_low_57
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 813834 - 814076
Alignment:
| Q |
1 |
cttattaattttttgtttcaattccacaaagacagtgatccctgactcaagtacagattcctatggatccggattctctaactttgaggcgccaaagtta |
100 |
Q |
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| T |
813834 |
cttattaattttttgtttcaattccacaaagacagtgatccctgactcaagtacagattcctatggatccagattctctaactttgaggcgccaaagtta |
813933 |
T |
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| Q |
101 |
ccctaactttcaactcatataaaccatcaggtctatcttatgcttcacacgataccataagtcannnnnnnctctcnnnnnnnttgagacaacaaaaaca |
200 |
Q |
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| T |
813934 |
ccctaactttcaactcatataaaccatcaggtctatcttatgcttcacacgataccataagtcatttttttccctcaaaaaaattgagacaacaaaaaca |
814033 |
T |
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| Q |
201 |
agacatgttgcttttccggctcctctgctatgccaccaccaaa |
243 |
Q |
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| T |
814034 |
agacatgttgcttttccgactcctctgctatgccaccgccaaa |
814076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 56384684 - 56384748
Alignment:
| Q |
65 |
ggatccggattctctaactttgaggcgccaaagttaccctaactttcaactcatataaaccatca |
129 |
Q |
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| T |
56384684 |
ggatccagattctctaactttggggcgccaaagtcaccctacctttcaacccatatggaccatca |
56384748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 41913856 - 41913774
Alignment:
| Q |
65 |
ggatccggattctctaactttgaggcgccaaagttaccctaactttcaactcatataaaccatcaggtctatcttatgcttca |
147 |
Q |
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| T |
41913856 |
ggatccggattctctaactttgtggcgccaaagataccctaactttcagctcatataaacctccagattgatcttatgcttca |
41913774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 26802774 - 26802715
Alignment:
| Q |
65 |
ggatccggattctctaactttgaggcgccaaagttaccctaactttcaactcatataaac |
124 |
Q |
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| T |
26802774 |
ggatccggattcagtaactttgtggcgccaaagttaccataaattttaactcatataaac |
26802715 |
T |
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