View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_59 (Length: 242)
Name: NF7494_low_59
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_59 |
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Alignment Details
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 32509986 - 32509850
Alignment:
| Q |
8 |
aacataatattaacgcggtctttaagaaaaaaccttaagcaactatttgaacaaagtcaagtctatttgcaaaaattcaaggaaattaacatcaataatt |
107 |
Q |
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| T |
32509986 |
aacataatattcacacggtctttgagaaaaaaccttaagcaactatttgaacaaagtcaagtctctttgcaaaaattcaaggaaattaacgtcaataatt |
32509887 |
T |
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| Q |
108 |
tccttgaagtgaaactattaaggtgaaacctaaccta |
144 |
Q |
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| T |
32509886 |
tccttaaaatgaaaatattaaggtgagacctagccta |
32509850 |
T |
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Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 149 - 237
Target Start/End: Complemental strand, 32509726 - 32509638
Alignment:
| Q |
149 |
atcttattatttgcatatttacctcactttgtacctcggtttatcctctatctttcattccactttcaaccactcctatattcttcgac |
237 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
32509726 |
atcttattatttgcatatttacctcactttgtacctgggtttatcctctatctttcattccactttcaaccactcctatcttcctcgac |
32509638 |
T |
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