View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_6 (Length: 623)
Name: NF7494_low_6
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 20 - 608
Target Start/End: Complemental strand, 24562784 - 24562196
Alignment:
| Q |
20 |
cgcattgccgaagaaatagtgttagctgactattgttgactacaagggttgtgcttggaattgtgatttgcagtttgtgattgtgggcaagaagttattc |
119 |
Q |
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| T |
24562784 |
cgcattgccgaagaaatagtgttagctgactattgttgactacaagggttgtgcttggaattgtgatttgcagtttgtgattgtgggcaagaagttattc |
24562685 |
T |
|
| Q |
120 |
tgcaagatcggaggtgactgggccatctcttgctttacccttaggttggtcgaaggtcatgctatcaagtttgctgctcatcaggaagaaaacaacactg |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562684 |
tgcaagatcggaggtgactgggccatctgttgctttacccttaggttggtcgaaggtcatgctatcaagtttgctgctcatcaggaagaaaacaacactg |
24562585 |
T |
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| Q |
220 |
tcctccacacgaggcattttccactgcagtgtactcataggagatttgtgaagcccattgagaatgtgcatgggaattatgtgtatcaagttaatcagta |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24562584 |
tcctccacacgaggcattttccactgcagtgtactcataggagatttgtgaagcccattgagaatgtgcatgggaattacgtgtatcaagttaatcagta |
24562485 |
T |
|
| Q |
320 |
tctaaagagttgcctagcaaagagcaaccttgggtagttattaagacgtgtagggctgcgctttgtatggtcggtgtcatttcttatgtggtcctttctg |
419 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562484 |
tctaaagagttgcccagcaaagagcaaccttgggtagttattaagacgtgtagggctgcgctttgtatggtcggtgtcatttcttatgtggtcctttctg |
24562385 |
T |
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| Q |
420 |
tttttgcaattgtgtatggtcgttttgtaactgttgtacttgaatccattttctttgctactatgtgtctgtaaattttaatggacggcgtgtttgggtg |
519 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562384 |
tttttgcaatcgtgtatggtcgttttgtaactgttgtacttgaatccattttctttgctactatgtgtctgtaaattttaatggacggcgtgtttgggtg |
24562285 |
T |
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| Q |
520 |
caattgtgtgcttatttgtttcatatgcttaagtgtggttgttttctaattgtgtgtggttgatgggttactaatagtgcggctgatgt |
608 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24562284 |
caattgtgtgcttatttgtttcatatgcttaagtgtggttgttttctaattgtgtgtggttgatgggttactaatagtgcggctgatgt |
24562196 |
T |
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