View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_60 (Length: 239)
Name: NF7494_low_60
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 4849588 - 4849374
Alignment:
| Q |
11 |
gtgctttcacaacctttagttcttgattacttgaaacctgttacactcaacttcacaactcaaggtaatgtttggtttaacattagtgcaacctcggatt |
110 |
Q |
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| T |
4849588 |
gtgctttcacaacctttagttcttgattacttgaaacctgttacactcaacttcacaactcaaggtaatgtttggtttaacattagcgcaacctcggatt |
4849489 |
T |
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| Q |
111 |
cggatgctcctcctatactcaatgccttcgagatctataagctcatgattcaacttgattcaccaacatccactcaagatggtacgtacaacacttatac |
210 |
Q |
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| T |
4849488 |
cggatgctcctcctatactcaatgccttcgagatctataagctcatgactcaacttgattcaccaacatcccctcaagatggtatgtacaacacttatac |
4849389 |
T |
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| Q |
211 |
tattctactatatgat |
226 |
Q |
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| T |
4849388 |
tatacta-tatatgat |
4849374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 27 - 213
Target Start/End: Complemental strand, 4805105 - 4804919
Alignment:
| Q |
27 |
tagttcttgattacttgaaacctgttacactcaacttcacaactcaaggtaatgtttggtttaacattagtgcaacctcggattcggatgctcctcctat |
126 |
Q |
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| T |
4805105 |
tagttcttgattacttgaagcctgttactctcaacatcaaaattcaaggtgatgttttgtttaacattagtgcaacctcagattcgaatgctcctcctat |
4805006 |
T |
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| Q |
127 |
actcaatgccttcgagatctataagctcatgattcaacttgattcaccaacatccactcaagatggtacgtacaacacttatactat |
213 |
Q |
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| T |
4805005 |
actcaatgcttacgagatctataagctcattaccccacttgattcgcctacatacgctcaagatggtacgtacaacacttatactat |
4804919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 4831007 - 4830817
Alignment:
| Q |
23 |
cctttagttcttgattacttgaaacctgttacactcaacttcacaactcaaggtaatgtttggtttaacattagtgcaacctcggattcggatgctcctc |
122 |
Q |
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| T |
4831007 |
cctttagttcttgattacttgaagcctataacactcaacttcaaaactaaaggtgatgtttggtttaacattagtgcaacctccgattcggatgctcctc |
4830908 |
T |
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| Q |
123 |
ctatactcaatgccttcgagatctataagctcatgattcaacttgattcaccaacatccactcaagatggtacgtacaacacttatactat |
213 |
Q |
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| T |
4830907 |
ctatactcaatgcctttgagatacataagctcataacaccggttgtttcaccaacagacgatcgagatggtatgtacaacacttatactat |
4830817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 200
Target Start/End: Complemental strand, 4795033 - 4794841
Alignment:
| Q |
8 |
cctgtgctttcacaacctttagttcttgattacttgaaacctgttacactcaacttcacaactcaaggtaatgtttggtttaacattagtgcaacctcgg |
107 |
Q |
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| T |
4795033 |
cctgtgctctctcagcccttagttcttgattacttgaaacctattacactcaactacaaaactcaaggggatgtttggttcaacattagtgcaacctcag |
4794934 |
T |
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| Q |
108 |
attcggatgctcctcctatactcaatgccttcgagatctataagctcatgattcaacttgattcaccaacatccactcaagatggtacgtaca |
200 |
Q |
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| T |
4794933 |
attctgatcttcctcctgtgctcaatgcttttgagatttatcagttcataacccaacttgattcaccaacagacgctcaagatggtacgtaca |
4794841 |
T |
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