View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_61 (Length: 239)
Name: NF7494_low_61
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 52160562 - 52160761
Alignment:
| Q |
1 |
cttatcacatatagtctagttaccacacatccaatgcaacatcttgtcatcttcatctctattacgcttaatttattcttgtgttggttctttcccgccc |
100 |
Q |
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| T |
52160562 |
cttatcacatatagtctagttaccacacatccaatgcaacatcttgtcatcttcatctctattacgcttaatttattctcgtgttggttctttcccgccc |
52160661 |
T |
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| Q |
101 |
agcacaacactatgtcccatacaacatcaagtttgctataaacaagaaaatagg-------gaaaaaatgagatgaatcacatttcatttttagaatata |
193 |
Q |
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| T |
52160662 |
aacacaacactatgtcccatacaacatcaagtttgctataaacaagaaaataggaagaaaaaaaaaaattagatgaatcacatctcatttttagaatata |
52160761 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 46146071 - 46146033
Alignment:
| Q |
63 |
tacgcttaatttattcttgtgttggttctttcccgccca |
101 |
Q |
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| T |
46146071 |
tacgcttattttattcttgtgttggttctttaccgccca |
46146033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 31636263 - 31636316
Alignment:
| Q |
48 |
catcttcatctctattacgcttaatttattcttgtgttggttctttcccgccca |
101 |
Q |
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|||| |||||||| ||||| ||||||||| ||||||||||||||| ||||||| |
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| T |
31636263 |
catcatcatctctgctacgcataatttatttttgtgttggttctttaccgccca |
31636316 |
T |
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