View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_65 (Length: 227)
Name: NF7494_low_65
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_65 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 2706801 - 2706715
Alignment:
| Q |
17 |
aaaatcaagatataagaggctaagcaattggttcaccaccaaacaaaaggaaaataagccatcattaagtttgtatgaaattgaagg |
103 |
Q |
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| T |
2706801 |
aaaatcaagatataagaggttaagcaattggttcaccaccaaacaaaaggaaaataagccatcattaagtttgtatgaaattgaagg |
2706715 |
T |
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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 2706634 - 2706576
Alignment:
| Q |
157 |
tgcataagtacaagttgttatgttaattttattatgtttgtattttacgttgtagatat |
215 |
Q |
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| T |
2706634 |
tgcataagtacaagttgttatgttaattttattatgtttgtattttacgttgtagatat |
2706576 |
T |
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