View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_68 (Length: 208)
Name: NF7494_low_68
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_68 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 44838402 - 44838226
Alignment:
| Q |
15 |
aatatcttccctcttggaacattactagtccatttattccatgaattcacaaggttagttatgtttccattatattgacaaggaggattattgtaaaatt |
114 |
Q |
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| T |
44838402 |
aatatcttccctcttggaacattactattccatttattccatgaattcacaaggttagttatgtttccattatattgacaaggaggattattgtaaaatt |
44838303 |
T |
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| Q |
115 |
gtacccaaacaaagtcaaaaagacctgtttcaagtgcagtgcccaaaaatttatctggaattggacattgaggagca |
191 |
Q |
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| T |
44838302 |
gtacccaaacaaagtcaaaaagacctgtttcaagtgcagtgcccaaaaatttatctggaattggacattgaggagca |
44838226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 191
Target Start/End: Complemental strand, 44849392 - 44849301
Alignment:
| Q |
100 |
gattattgtaaaattgtacccaaacaaagtcaaaaagacctgtttcaagtgcagtgcccaaaaatttatctggaattggacattgaggagca |
191 |
Q |
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| T |
44849392 |
gattattatagaactgaacccaaacaaagtcaaaaagtcctgtttcaagggctcttcctaagaatctatcaggaaatggacattgaggagca |
44849301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 47980431 - 47980378
Alignment:
| Q |
89 |
ttgacaaggaggattattgtaaaattgtacccaaacaaagtcaaaaagacctgt |
142 |
Q |
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| T |
47980431 |
ttgacaaggtggattgttgtaaaattgcacccaaacatagtcaaaaagacctgt |
47980378 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 24367486 - 24367551
Alignment:
| Q |
87 |
tattgacaaggaggattattgtaaaattgtacccaaacaaagtcaaaaagacctgtttcaagtgca |
152 |
Q |
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| T |
24367486 |
tattgacaaggagggttgttgtagaattgtacccaaacataatcaaaaagtcctgttgtaagtgca |
24367551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 24455103 - 24455152
Alignment:
| Q |
87 |
tattgacaaggaggattattgtaaaattgtacccaaacaaagtcaaaaag |
136 |
Q |
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| T |
24455103 |
tattgacaagaagggttattgtagaattgtacccaaacaaaatcaaaaag |
24455152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 19135858 - 19135915
Alignment:
| Q |
87 |
tattgacaaggaggattattgtaaaattgtacccaaacaaagtcaaaaagacctgttt |
144 |
Q |
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| T |
19135858 |
tattgacaaggagggttattgtagaattgaacccaaacacaatcgaaaagacctgttt |
19135915 |
T |
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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 148913 - 148848
Alignment:
| Q |
87 |
tattgacaaggaggattattgtaaaattgtacccaaacaaagtcaaaaagacctgtttcaagtgca |
152 |
Q |
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| T |
148913 |
tattgacaaggagggttattgtagaactgtacccaaacataatcaaagaggcctgttgtaagtgca |
148848 |
T |
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