View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7494_low_8 (Length: 572)
Name: NF7494_low_8
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 36993149 - 36993591
Alignment:
| Q |
17 |
caagtgcaattggtgtttgtctcccacttcttgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcatttgctgccgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36993149 |
caagtgcaattggtgtttgtctcccacttcttgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcatttgctgccgg |
36993248 |
T |
|
| Q |
117 |
tgtgatactgtccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttctccatgtttaaacgaacatccttggggtgattttcccttc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36993249 |
tgtgatactgtccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttctccatgtttaaacgaacatccttggggtgattttcccttc |
36993348 |
T |
|
| Q |
217 |
actggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgccaccgcttattttcagaaccattattctaaaagggcaccggcac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36993349 |
actggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgcaaccgcttattttcagaaccattattctaaaagggcaccggcac |
36993448 |
T |
|
| Q |
317 |
aggttgaaagtcagacaaccccagacgtggagaatgaagaacatacacatgttcatgctcacgcatcacatagtcatgcacatggtcatatttctttcga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36993449 |
aggttgaaagtcagacaaccccagacgtggagaatgaagaacatacacatgttcatgctcacgcatcacatagtcatgcacatggtcatatttctttcga |
36993548 |
T |
|
| Q |
417 |
tcagtcatcagaacttcttcgtcatagggtcatatcacaggta |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36993549 |
tcagtcatcagaacttcttcgtcatagggtcatatcacaggta |
36993591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 37018589 - 37019031
Alignment:
| Q |
17 |
caagtgcaattggtgtttgtctcccacttcttgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcatttgctgccgg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37018589 |
caagtgcaattggtgtttgtctcccacttcttgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcatttgctgccgg |
37018688 |
T |
|
| Q |
117 |
tgtgatactgtccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttctccatgtttaaacgaacatccttggggtgattttcccttc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37018689 |
tgtgatactgtccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttctccatgtttaaacgaacatccttggggtgattttcccttc |
37018788 |
T |
|
| Q |
217 |
actggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgccaccgcttattttcagaaccattattctaaaagggcaccggcac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37018789 |
actggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgcaaccgcttattttcagaaccattattctaaaagggcaccggcac |
37018888 |
T |
|
| Q |
317 |
aggttgaaagtcagacaaccccagacgtggagaatgaagaacatacacatgttcatgctcacgcatcacatagtcatgcacatggtcatatttctttcga |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37018889 |
aggttgaaagtcagacaaccccagacgtggagaatgaagaacatacacatgttcatgctcacgcatcacatagtcatgcacatggtcatatttctttcga |
37018988 |
T |
|
| Q |
417 |
tcagtcatcagaacttcttcgtcatagggtcatatcacaggta |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37018989 |
tcagtcatcagaacttcttcgtcatagggtcatatcacaggta |
37019031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 17 - 350
Target Start/End: Original strand, 36938756 - 36939089
Alignment:
| Q |
17 |
caagtgcaattggtgtttgtctcccacttcttgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcatttgctgccgg |
116 |
Q |
| |
|
|||||| ||||||||||||| | ||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| || |
|
|
| T |
36938756 |
caagtggaattggtgtttgtattccacttcttggcaaagtgataccggcgttaagccccgaaaaagatatatttttcatcatcaaagcctttgctgctgg |
36938855 |
T |
|
| Q |
117 |
tgtgatactgtccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttctccatgtttaaacgaacatccttggggtgattttcccttc |
216 |
Q |
| |
|
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| ||| |
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|
| T |
36938856 |
tgtgattttggcaaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttcacctcgtttaaagaaacatccttggggtgattttccattc |
36938955 |
T |
|
| Q |
217 |
actggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgccaccgcttattttcagaaccattattctaaaagggcaccggcac |
316 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| |||||| |||| |
|
|
| T |
36938956 |
actggttttgtggctatgtgcactgctatggggactcttatggttgatacttatgccactgcttattttcaaaaccattattccaaaaaggcaccagcac |
36939055 |
T |
|
| Q |
317 |
aggttgaaagtcagacaaccccagacgtggagaa |
350 |
Q |
| |
|
||||||||| | || | ||||||| |||||||| |
|
|
| T |
36939056 |
aggttgaaaatgaggtatccccagatgtggagaa |
36939089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 36955469 - 36955760
Alignment:
| Q |
18 |
aagtgcaattggtgtttgtctcccacttcttgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcatttgctgccggt |
117 |
Q |
| |
|
||||||||||||||||| | ||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| ||| | |||||||||||| |
|
|
| T |
36955469 |
aagtgcaattggtgtttttatcccacttcttggcaaagtaataccggcgttaagccctgaaaaagatatatttttcatcattaaaacctttgctgccggt |
36955568 |
T |
|
| Q |
118 |
gtgatactgtccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttctccatgtttaaacgaacatccttggggtgattttcccttca |
217 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
36955569 |
gtgatattatccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttcaccttgtttaaaggaacatccttggggtgattttccattca |
36955668 |
T |
|
| Q |
218 |
ctggttttgtagctatgtgcaccgctatggggactcttatggttgatacttatgccaccgcttattttcagaaccattattctaaaagggca |
309 |
Q |
| |
|
| |||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| | | ||||||||| |||| |
|
|
| T |
36955669 |
ccggttttgtggctatgtgcactgctatggggtctctcatggttgatacttatgccaccgcttattttcagaatcgtcattctaaaaaggca |
36955760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 17 - 265
Target Start/End: Original strand, 36950981 - 36951228
Alignment:
| Q |
17 |
caagtgcaattggtgtttgtctcccacttcttgggaaagtgataccggcattaagccctgaaaaagatatattttttatcatcaaagcatttgctgccgg |
116 |
Q |
| |
|
|||||| ||||||||||||| | |||||||| || |||||||||||||| |||||||||||||||||||||||||| || || ||||| |||||||| || |
|
|
| T |
36950981 |
caagtggaattggtgtttgtattccacttctaggcaaagtgataccggcgttaagccctgaaaaagatatatttttcattattaaagcctttgctgctgg |
36951080 |
T |
|
| Q |
117 |
tgtgatactgtccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttctccatgtttaaacgaacatccttggggtgattttcccttc |
216 |
Q |
| |
|
|||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
36951081 |
tgtgattttggccaccggtttcattcacgtgcttcctgatgcttttgagaatcttacttcacc-tgtttaaaggaacatccttggggtgattttccattc |
36951179 |
T |
|
| Q |
217 |
actggttttgtagctatgtgcaccgctatggggactcttatggttgata |
265 |
Q |
| |
|
|| |||||||| ||||||||||| || ||||||| |||||||||||||| |
|
|
| T |
36951180 |
accggttttgtggctatgtgcactgccatggggattcttatggttgata |
36951228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 36951438 - 36951292
Alignment:
| Q |
78 |
aaaagatatattttttatcatcaaagcatttgctgccggtgtgatactgtccaccggtttcattcatgtgcttcctgatgcttttgagaatcttacttct |
177 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||||||| ||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
36951438 |
aaaagatatatttttcatcattaaagcctttgctg---gtgtgattttggccaccggtttcattcacgtgcttcctgatgcttttgagaatcttacttca |
36951342 |
T |
|
| Q |
178 |
ccatgtttaaacgaacatccttggggtgattttcccttcactggttttgt |
227 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
36951341 |
ccttgtttaaaggaacatccttggggtgattttccattcaccggttttgt |
36951292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 364 - 459
Target Start/End: Original strand, 36955839 - 36955934
Alignment:
| Q |
364 |
catgttcatgctcacgcatcacatagtcatgcacatggtcatatttctttcgatcagtcatcagaacttcttcgtcatagggtcatatcacaggta |
459 |
Q |
| |
|
||||||||| |||| ||||| ||| ||||||||||||| ||| |||||| ||||| ||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36955839 |
catgttcatactcatgcatcccatggtcatgcacatggccatgtttcttccgatccgtcttcagaacttcttcgtcatagggtcatatcgcaggta |
36955934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 459 - 496
Target Start/End: Original strand, 36993612 - 36993649
Alignment:
| Q |
459 |
atataaagatatttgtgcatgagatatgaatatgattt |
496 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36993612 |
atataaagatatttgtgcatgagatgtgaatatgattt |
36993649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 459 - 496
Target Start/End: Original strand, 37019052 - 37019089
Alignment:
| Q |
459 |
atataaagatatttgtgcatgagatatgaatatgattt |
496 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37019052 |
atataaagatatttgtgcatgagatgtgaatatgattt |
37019089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 461
Target Start/End: Original strand, 36939174 - 36939215
Alignment:
| Q |
420 |
gtcatcagaacttcttcgtcatagggtcatatcacaggtata |
461 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
36939174 |
gtcaacagaacttcttcgccatagggtcataacacaggtata |
36939215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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