View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7494_low_9 (Length: 545)
Name: NF7494_low_9
Description: NF7494
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7494_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 11 - 526
Target Start/End: Complemental strand, 18327128 - 18326617
Alignment:
| Q |
11 |
agaatatgtcatgacaggtaaaaacaaaaatgttagtttaatgttgtcttaatagtttttccttatagtattaaatagttcttaaaatgtactacttgtg |
110 |
Q |
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| T |
18327128 |
agaatatgtcatgacaggtaaaaacaaaaatgttagtttaatgttgtcttaatagtttttccttatagtattaaatagttcttaaaatgtactacttgtg |
18327029 |
T |
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| Q |
111 |
aagcactatctaaattaaatatacttttgagtcaaaaacaaatctaaaatatactttacatagctcccaagaataatgtacttaattaaaccaagtttta |
210 |
Q |
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| T |
18327028 |
aagcactatctaaattaaatatacttttgagtcaaaaacaaatctaaaatatactttacatagctcccaagaataatgtacttaa----accaagtttta |
18326933 |
T |
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| Q |
211 |
cttaaaagaaacttaagctttgttttgctatatattaattaataattatagtgataatgtgctacattaacgatgccagcatatgattaactggaactgg |
310 |
Q |
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| T |
18326932 |
cttaaaataaacttaagctttgttttgctatatattaattaataattatagtgataatgtgctacattaacgatgccagcatatgattgactggaactgg |
18326833 |
T |
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| Q |
311 |
gattcttatgactaaatcaattttattttaataatgctttcttataggtcacttaacagccaagagtgacgtgtacagctttggagtagttttattggag |
410 |
Q |
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| T |
18326832 |
gattcttatgactaaatcaattttattttaataatgttttcttataggtcacttaacggccaagagtgacgtgtacagctttggagtagttttattggag |
18326733 |
T |
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| Q |
411 |
ttgctaacagggagaaaatcagtggacaaaaatcgtcctcaaagggaacaaaacctagtagattgggcaagaccaatgttaattgattcaaggaaaattt |
510 |
Q |
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| T |
18326732 |
ttgctaacagggagaaagtcagtggacaaaaatcgtcctcaaagggaacaaaacctagtagattgggcaagaccaatgttaattgattcaaggaaaatta |
18326633 |
T |
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| Q |
511 |
gcaaaattatggatcc |
526 |
Q |
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| T |
18326632 |
gcaaaattatggatcc |
18326617 |
T |
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