View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7495_high_15 (Length: 223)
Name: NF7495_high_15
Description: NF7495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7495_high_15 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 40745513 - 40745291
Alignment:
| Q |
1 |
tgatcccatgcaatgtttttccactgtatgttttattatgtgtgcttagaaattgttggagacaatcatgtttttggctcaccacattacaacctgactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40745513 |
tgatcccatgcaatgtttttccactgtatgttttattatgtgtgcttagaaactgttggagacaatcatgtttttggctcaccacattacaacctgactt |
40745414 |
T |
|
| Q |
101 |
gaaaatcagatttaccactctttgtttggatttatgtatgcgaatacgaccagtgccggtctaatcaattttatttgtaggtgaggtctaaaacaagttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40745413 |
gaaaatcagatttaccactctttgtttggatttatgtctgcgaatacgaccagttccggtctaatcaattttatttgtaggtgaggtctaaaacaagttt |
40745314 |
T |
|
| Q |
201 |
taatatataaggcttttttgttt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
40745313 |
taatatataaggcttttttgttt |
40745291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 41703280 - 41703226
Alignment:
| Q |
169 |
ttttatttgtaggtgaggtctaaaacaagttttaatatataaggcttttttgttt |
223 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
41703280 |
ttttatttgtaggtgatgcctaaaacaaattttaatatatgaggtctttttgttt |
41703226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 32598361 - 32598413
Alignment:
| Q |
167 |
aattttatttgtaggtgaggtctaaaacaagttttaatatataaggctttttt |
219 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| |||| ||||| |
|
|
| T |
32598361 |
aattttatttgtagaagaggtctaaaacaaattttaatatatgaggcattttt |
32598413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 31277946 - 31277994
Alignment:
| Q |
160 |
tctaatcaattttatttgtaggtgaggtctaaaacaagttttaatatat |
208 |
Q |
| |
|
|||||| ||||||||| ||||||| ||| |||||||| ||||||||||| |
|
|
| T |
31277946 |
tctaataaattttattcgtaggtgtggtgtaaaacaaattttaatatat |
31277994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University