View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7495_high_2 (Length: 492)
Name: NF7495_high_2
Description: NF7495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7495_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 475
Target Start/End: Complemental strand, 26949508 - 26949049
Alignment:
| Q |
17 |
acatcaaaaaccatttgacattttgagagataaaaagataatgcagagtaatgtaatatgttattgatgtgatagaaagagaaatatataaagagagaat |
116 |
Q |
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| T |
26949508 |
acatcaaaaaccatttgacattttgagagataaaaagataatgtagagtaatgtaatatgttgttgatgtgatagaaagagatatatataaagagagaat |
26949409 |
T |
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| Q |
117 |
aatatgttgaataagtgtataaaatttaggggtgtttaatat-ttttgtcttataaagatagtgatgatctcgattagttggatctaaagatactatcaa |
215 |
Q |
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| T |
26949408 |
aatatgttgaataagtgtataaaatttaggggtgtttaatattttttgtcttataaagatagtgatgatctcaattagttggatctaaagatactatcaa |
26949309 |
T |
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| Q |
216 |
tatcatttatagcacatacattnnnnnnnnntagaaaataattgaatagaaagtgtatgagtgtgtggtnnnnnnncataaatcaaccctacatagcaaa |
315 |
Q |
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| T |
26949308 |
tatcatttatagcacacacattaaaaaaaaatagaaaataattgaatagaaagtgtatgagtgtgtggtcggggggcataaatcaaccctacatagcaaa |
26949209 |
T |
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| Q |
316 |
agtgcacgaaagcgaaaattatgaatattccacctattggccaagaatt-atccctnnnnnnnngtagaattattcatcaatccagatatatttggatcg |
414 |
Q |
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| T |
26949208 |
agtacacgaaagcgaaaattatgaatattccacctattggccaagaattcatccct-aaaaaaagtagaattattcatcaatccagatatatttggatcg |
26949110 |
T |
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| Q |
415 |
tgcaacgtgcaacgtgctgtaaaaccatgcaaacatctactacaacaaatccctattcatg |
475 |
Q |
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| T |
26949109 |
tgcaacgtgcaacgtgctgtaaaaccatgcaaccatctactacaacaaatccctattcatg |
26949049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 36424704 - 36424744
Alignment:
| Q |
104 |
ataaagagagaataatatgttgaataagtgtataaaattta |
144 |
Q |
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| T |
36424704 |
ataaagagaaaataaaatgttaaataagtgtataaaattta |
36424744 |
T |
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