View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7495_high_4 (Length: 410)
Name: NF7495_high_4
Description: NF7495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7495_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 70 - 394
Target Start/End: Original strand, 11039172 - 11039515
Alignment:
| Q |
70 |
aataaatttattgatagcttactatatttaattagatagaactgatactactaactga----------acctcaatcccctcatgcaatatcaaattcct |
159 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
11039172 |
aataaatttatttatagcttactatatttaattagatagaactgatactactaactgacgagtactgaacctcaatcccctcatgcg-tatcgaattcct |
11039270 |
T |
|
| Q |
160 |
cacatgc----------gaattatatgaatattgttagcatggcccacaacaaacagttccatatgatgagaggaaattatttggaagctgttatagact |
249 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11039271 |
cacatgccgcgtaacgcgaattatatgaatattgttagcatggcccacaacaaacagttccatatgatgagaggaaattatttggaagctgttatagact |
11039370 |
T |
|
| Q |
250 |
atagtcacagtgaatttgaaaaatttctataaacacaatcttagacagtactattgctcaagaatcaatatcatgaacacttattatcatgttatgggat |
349 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11039371 |
atagtcacagtgagtttgaaaaatttctataaacacaatcttagacggtactattgctcaagaatcaatatcatgaacacttattatcatgttatgggat |
11039470 |
T |
|
| Q |
350 |
tattgttgctcgtattttaccttaatacgttggtggtggagtttg |
394 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11039471 |
tattgttgctcgtatgttaccttaatacgttggtggtggagtttg |
11039515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 309 - 376
Target Start/End: Original strand, 11024392 - 11024459
Alignment:
| Q |
309 |
aagaatcaatatcatgaacacttattatcatgttatgggattattgttgctcgtattttaccttaata |
376 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
11024392 |
aagaatcaatatcatgaacacttattctcatgttatgggatggttgttgttcgtgttttaccttaata |
11024459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 249 - 336
Target Start/End: Original strand, 10976666 - 10976754
Alignment:
| Q |
249 |
tatagtcacagtgaatttgaaaaatttctataaacacaatcttagaca--gtactattgctcaagaatcaatatcatgaacacttattat |
336 |
Q |
| |
|
|||||| | ||||| ||||||||||| ||||||||| | || ||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10976666 |
tatagtgaaagtgagtttgaaaaattcctataaacagagtca-agacatagtactattgctcaagaatcaataacatgaacacttattat |
10976754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 336
Target Start/End: Original strand, 10906266 - 10906354
Alignment:
| Q |
249 |
tatagtcacagtgaatttgaaaaatttctataaacacaatcttagaca--gtactattgctcaagaatcaatatcatgaacacttattat |
336 |
Q |
| |
|
|||||| | ||||| ||||||||||| ||||||||| | | | ||||| ||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
10906266 |
tatagtgaaagtgagtttgaaaaattcctataaacagagt-taagacatagtactattgctcaagaatcgataccatgaacacttattat |
10906354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 10989920 - 10989960
Alignment:
| Q |
296 |
agtactattgctcaagaatcaatatcatgaacacttattat |
336 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| ||||| |
|
|
| T |
10989920 |
agtactattactcaagaatcaataccatgaacactcattat |
10989960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 108
Target Start/End: Complemental strand, 3069773 - 3069738
Alignment:
| Q |
73 |
aaatttattgatagcttactatatttaattagatag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
3069773 |
aaatttattgatagcttactatatttaattagatag |
3069738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 104
Target Start/End: Complemental strand, 25089121 - 25089089
Alignment:
| Q |
72 |
taaatttattgatagcttactatatttaattag |
104 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
25089121 |
taaatttattgataacttactatatttaattag |
25089089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University