View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7495_low_14 (Length: 290)
Name: NF7495_low_14
Description: NF7495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7495_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 7760007 - 7759734
Alignment:
| Q |
1 |
tgtggttttttgaggaagatgaagtgaaagcatagagagcaaagagattggttgtgatgacacagaaaatcatgagaatgttaacagctgaagaacaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7760007 |
tgtggttttttgaggaagatgaagtgaaagcatagagagcaaagagattggttgtgatgacacagaaaatcatgagaatgttaacagctgaagaacaaag |
7759908 |
T |
|
| Q |
101 |
tgttgctcttttgaatcttgctgttccatctccaattttcagtgaaactgaacccatctttgtgagatttgcaagtgaagtactagatttggatgagtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7759907 |
tgttgctcttttgaatcttgctgttccatctccaattttcagtgaaactgaacccatctttgtgagatttgcaagtgaagcactagatttggatgagtga |
7759808 |
T |
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| Q |
201 |
agtaagaaaagcttggtttcaaagaaaccaaatctctatggaacctttgtgtcggtttgtgtttgtaacatttt |
274 |
Q |
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| T |
7759807 |
agtaagaaaagcttggtttcaaagaaaccaaatctctatggaacctttgtgtcggtttgtgtttgtaacatttt |
7759734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 52953125 - 52952989
Alignment:
| Q |
21 |
gaagtgaaagcatagagagcaaagagattggttgtgatgacacagaaaatcatgagaatgttaacagctgaagaacaaagtgttgctcttttgaatcttg |
120 |
Q |
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|||||||||||||| |||||||| |||||||||||||| || | || ||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
52953125 |
gaagtgaaagcataaagagcaaaaagattggttgtgataacggataagatcatgagaatgttaacagctgaagaacaaagtgttgattttttgaatcttg |
52953026 |
T |
|
| Q |
121 |
ctgttccatctccaattttcagtgaaactgaacccat |
157 |
Q |
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| T |
52953025 |
ctgttccatcaccaattttcaaagaaacagaacccat |
52952989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 31904401 - 31904534
Alignment:
| Q |
21 |
gaagtgaaagcatagagagcaaagagattggttgtgatgacacagaaaatcatgagaatgttaacagctgaagaacaaagtgttgctcttttgaatcttg |
120 |
Q |
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| T |
31904401 |
gaagtgaaagcataaagagcaaaaagattggttgtgataacggataagatcatgagaatgttaacaactgaagaacaaagtgttgagtttttgaatcttg |
31904500 |
T |
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| Q |
121 |
ctgttccatctccaattttcagtgaaactgaacc |
154 |
Q |
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| T |
31904501 |
ctgttccatcaccaattttcaaagaaacagaacc |
31904534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 31673574 - 31673486
Alignment:
| Q |
69 |
atcatgagaatgttaacagctgaagaacaaagtgttgctcttttgaatcttgctgttccatctccaattttcagtgaaactgaacccat |
157 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| |||||||| |
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| T |
31673574 |
atcatgagaatgttaacaactgaagaacaaagtgttgagtttttgaatcttgctgttccatcaccaattttcaaagaaacagaacccat |
31673486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 31922100 - 31922186
Alignment:
| Q |
69 |
atcatgagaatgttaacagctgaagaacaaagtgttgctcttttgaatcttgctgttccatctccaattttcagtgaaactgaaccc |
155 |
Q |
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| T |
31922100 |
atcatgagaatgttaacaactgaagaacagagtgttgagtttttgaatcttgctgttccatcaccaattttcaaagaaacagaaccc |
31922186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 248
Target Start/End: Complemental strand, 43071099 - 43071017
Alignment:
| Q |
162 |
gtgagatttgcaagtgaagtactagatttggatgagtgaagtaagaaaagcttggtttcaaagaaaccaaatctctatggaaccttt |
248 |
Q |
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| T |
43071099 |
gtgagatttgcaagtgaagtaa---atttggatgagt-aagtaagaaaagtttggttccaaataaaccaaatcactatggaaccttt |
43071017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 114 - 157
Target Start/End: Complemental strand, 43071164 - 43071121
Alignment:
| Q |
114 |
aatcttgctgttccatctccaattttcagtgaaactgaacccat |
157 |
Q |
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| T |
43071164 |
aatcttgctgttccatcaccaattttcaaagaaactgaacccat |
43071121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 39034268 - 39034325
Alignment:
| Q |
188 |
tttggatgagtgaagtaagaaaagcttggtttcaaagaaaccaaatctctatggaacct |
246 |
Q |
| |
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||||||||||| ||||||||||||||| | |||||||| |||||||||| ||||||||| |
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| T |
39034268 |
tttggatgagt-aagtaagaaaagcttagcttcaaagagaccaaatctcaatggaacct |
39034325 |
T |
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