View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7495_low_17 (Length: 229)

Name: NF7495_low_17
Description: NF7495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7495_low_17
NF7495_low_17
[»] chr8 (9 HSPs)
chr8 (2-225)||(2027908-2028131)
chr8 (47-225)||(1950865-1951045)
chr8 (47-225)||(2032489-2032667)
chr8 (125-225)||(2053814-2053914)
chr8 (106-225)||(10767186-10767306)
chr8 (126-225)||(2049809-2049908)
chr8 (101-225)||(2045975-2046099)
chr8 (126-225)||(2036623-2036722)
chr8 (179-225)||(2021932-2021978)
[»] chr4 (1 HSPs)
chr4 (102-226)||(48909125-48909249)
[»] chr2 (3 HSPs)
chr2 (179-224)||(28713715-28713760)
chr2 (179-224)||(28743615-28743660)
chr2 (179-224)||(28736989-28737034)
[»] chr1 (1 HSPs)
chr1 (180-225)||(16419771-16419816)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 2027908 - 2028131
Alignment:
Q  2 agttcaatagtcatttgaatccaattacttattctattgtcacatagaatataaattcaagtttcttctgctcacttttctagttacaatatctagcttc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2027908 agttcaatagtcatttgaatccaattacttattctattgtcacatagaatataaattcaagtttcttctgctcacttttctagttacaatatctagcttc 2028007  T
Q  102 agagccactacaaacaaaagggaaatgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaag 201  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2028008 agaaccactacaaacaaaagggaaatgggaactactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaag 2028107  T
Q  202 ctggtgtaaaaggacttgttgatg 225  Q
    ||||||||||||||||||||||||    
T  2028108 ctggtgtaaaaggacttgttgatg 2028131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 47 - 225
Target Start/End: Complemental strand, 1951045 - 1950865
Alignment:
Q  47 agaatataaattcaagtttcttctgctcacttttctagttacaatatctagct--tcagagccactacaaacaaaagggaaatgggaaccactaatacaa 144  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||| ||||||||||||||||||||||    
T  1951045 agaatataaattcaagcttcttctgctcacttttctagttacaatatctagctattcagaaccactacaaacaaaagtgaaatgggaaccactaatacaa 1950946  T
Q  145 ccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 225  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1950945 ccaagcctaaccttgattctacattcaatgaacgtaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 1950865  T

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Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 47 - 225
Target Start/End: Original strand, 2032489 - 2032667
Alignment:
Q  47 agaatataaattcaagtttcttctgctcacttttctagttacaatatctagcttcagagccactacaaacaaaagggaaatgggaaccactaatacaacc 146  Q
    ||||||||||||| || ||  ||| |||||| |||||||||| |||||||||| |||| |||||||||||| |||  |||||||||||||    ||||||    
T  2032489 agaatataaattctagctttgtctactcactcttctagttaccatatctagctacagaaccactacaaacataagaaaaatgggaaccacaggcacaacc 2032588  T
Q  147 aagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 225  Q
    ||||||||||||||||| | ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2032589 aagcctaaccttgattctatattgagtgaacgcaaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 2032667  T

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Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 125 - 225
Target Start/End: Original strand, 2053814 - 2053914
Alignment:
Q  125 aatgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgat 224  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2053814 aatgggaaccattgatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgat 2053913  T
Q  225 g 225  Q
    |    
T  2053914 g 2053914  T

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Target: chr8; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 10767186 - 10767306
Alignment:
Q  106 ccactacaaaca-aaagggaaatgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctg 204  Q
    |||||||||||| ||||  |||||||||||||| |||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||    
T  10767186 ccactacaaacagaaagaaaaatgggaaccactgatacaaccaagcctaaccttgattctttattgaatgaacgcaaagcatttgatgaaacaaaagctg 10767285  T
Q  205 gtgtaaaaggacttgttgatg 225  Q
    |||||||||||||||||||||    
T  10767286 gtgtaaaaggacttgttgatg 10767306  T

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Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 2049809 - 2049908
Alignment:
Q  126 atgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 225  Q
    |||||||||| | ||||||||||||||||| ||||||| | ||| | ||| |||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  2049809 atgggaaccattgatacaaccaagcctaactttgattctatattgagtgagcgcatagcatttgatgaaacaaaagcaggtgtaaaaggacttgttgatg 2049908  T

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Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 101 - 225
Target Start/End: Original strand, 2045975 - 2046099
Alignment:
Q  101 cagagccactacaaacaaaagggaaatgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaa 200  Q
    |||| ||||||||| || |||  | |||||||||| | || |||||| |||||||||||||||   | | ||||||||||||||||||||||||||||||    
T  2045975 cagaaccactacaagcataagaaatatgggaaccattgatgcaaccatgcctaaccttgattctgtaatgaatgaacgcaaagcatttgatgaaacaaaa 2046074  T
Q  201 gctggtgtaaaaggacttgttgatg 225  Q
     ||||||| ||||||||||||||||    
T  2046075 tctggtgtgaaaggacttgttgatg 2046099  T

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Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 225
Target Start/End: Original strand, 2036623 - 2036722
Alignment:
Q  126 atgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 225  Q
    |||||||||| | || |||||| |||||||||||||||   | | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  2036623 atgggaaccattgatgcaaccatgcctaaccttgattctgtaatgaatgaacgcaaagcatttgatgaaacaaaatctggtgtgaaaggacttgttgatg 2036722  T

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Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 2021932 - 2021978
Alignment:
Q  179 caaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 225  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||    
T  2021932 caaagcatttgatgaaacaaaagatggtgtcaaaggacttgttgatg 2021978  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 48909249 - 48909125
Alignment:
Q  102 agagccactacaaacaaaagggaaatgggaaccactaatacaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaag 201  Q
    ||||||||| |||| | |||  |||||||||||||  ||||||||||||||||| ||||||| | ||| | |||||||||||||||||||||||||||||    
T  48909249 agagccactgcaaaaataagaaaaatgggaaccacggatacaaccaagcctaactttgattctatattgagtgaacgcaaagcatttgatgaaacaaaag 48909150  T
Q  202 ctggtgtaaaaggacttgttgatga 226  Q
    || ||||||||||| ||||||||||    
T  48909149 ctagtgtaaaaggatttgttgatga 48909125  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 28713760 - 28713715
Alignment:
Q  179 caaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgat 224  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||    
T  28713760 caaagcatttgatgaaacaaaagctggtgttaaaggccttgttgat 28713715  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 28743660 - 28743615
Alignment:
Q  179 caaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgat 224  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||    
T  28743660 caaagcatttgatgaaacaaaagctggtgttaaaggccttgttgat 28743615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 28737034 - 28736989
Alignment:
Q  179 caaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgat 224  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||||    
T  28737034 caaagcatttgatgaaagaaaagctggtgttaaaggccttgttgat 28736989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 16419816 - 16419771
Alignment:
Q  180 aaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatg 225  Q
    ||||| |||||||||||||||  |||||||||||||||||||||||    
T  16419816 aaagcttttgatgaaacaaaatttggtgtaaaaggacttgttgatg 16419771  T

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