View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7495_low_2 (Length: 663)
Name: NF7495_low_2
Description: NF7495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7495_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 560; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 15 - 647
Target Start/End: Original strand, 36549945 - 36550577
Alignment:
| Q |
15 |
cccgatctaatattacttatctcccaagaataatctttactatataactaagtatttcaaaaaatttaataggtacgatcaacacaatattattaaaatt |
114 |
Q |
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| T |
36549945 |
cccgaactaatattacttatctctcacgaataatctttactatataactaagtatttcaaaaaatttaataggtacgatcaacacaatattattaaaatt |
36550044 |
T |
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| Q |
115 |
tgatactttctattaaggaaaagaaagacgtagtattgaatattacacgaaaatgcatctcatgtaaattcattttcaacatgcggcattacttgaacca |
214 |
Q |
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| T |
36550045 |
tgatactttctattaaggaaaagaaagacgtagtattgaatattacacgaaaatgcatctcatgtaaattcattttcaacatgcggcattatttgaacca |
36550144 |
T |
|
| Q |
215 |
atatcagattataaaaacagtaacacaaaatnnnnnnnnnnnnnnnaaaaaagtaacaccttacttgaattttcaaccatactaattaacacacttgtgt |
314 |
Q |
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| T |
36550145 |
atatcagattataaaaacagtaacacaaaatcccccctcccccccaaaaaaagtaacaccttacttgcattttcaaccatactaattaacacacttgtgt |
36550244 |
T |
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| Q |
315 |
tcattacttcattcttatcttaactgtggatcggtattaatcttcctctctaaaaagatcaagaaaaactgtagtcttgcacttgggacactttggttca |
414 |
Q |
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| T |
36550245 |
tcattacttcattcttatcttaactgtggatcggtattaatcttcctctataaaaagatcaagaaaaactgtagtcttgcacttgggacactttggttca |
36550344 |
T |
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| Q |
415 |
acttctgatgacataacatacatgtaacatttaggacaaccaacaagaaccatctcctttgtaattgcgtttgcatactgcgctacattatcttcttttg |
514 |
Q |
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| T |
36550345 |
acttctgatgacataacatacatgtaacatttaggacaaccaacaagaaccatctcctttgtaattgcgtttgcatactgcgctacattatcttcttttg |
36550444 |
T |
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| Q |
515 |
tctccgtcgaggctccttgatcatgaacagtcatctttgatgaatatgatattgaagacgaggatgaacatggtgacaccaaccccggcaagtgatcaac |
614 |
Q |
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| T |
36550445 |
tctccgtcgaggctccttgatcatgaacagtcatctttgatgaatttgatattgaagacgaggatgaacatggtgacaccaaccccggcaagtgatcaac |
36550544 |
T |
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| Q |
615 |
tgacgatgatttcgattcctctggtgatggatg |
647 |
Q |
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| T |
36550545 |
tgacgatgatttcgattcctctggtgatggatg |
36550577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 367 - 478
Target Start/End: Original strand, 36545314 - 36545425
Alignment:
| Q |
367 |
aaaagatcaagaaaaactgtagtcttgcacttgggacactttggttcaacttctgatgacataacatacatgtaacatttaggacaaccaacaagaacca |
466 |
Q |
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||||||||||||| ||||| || ||||||| |||||||||||| ||||| |||||||| | |||||||||||||||||| ||||||||||||| |||| |
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| T |
36545314 |
aaaagatcaagaagtactgtggtgttgcactggggacactttggctcaacctctgatgaaagaacatacatgtaacatttttgacaaccaacaagcacca |
36545413 |
T |
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| Q |
467 |
tctcctttgtaa |
478 |
Q |
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||| |||||||| |
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| T |
36545414 |
tcttctttgtaa |
36545425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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