View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7495_low_3 (Length: 513)
Name: NF7495_low_3
Description: NF7495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7495_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 19545957 - 19546443
Alignment:
| Q |
18 |
catgctatgcttttcataagttttattgtgttagttattggagtatagtcgttatagatgttttggtgagaaaaatggcataaggaaagaagaatagcaa |
117 |
Q |
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|||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19545957 |
catgttatgcttttcataagtttaattgtgttagttattgaagtatagtcgttatagatgttttggtgagaaaaatggcataaggaaagaagaatagcaa |
19546056 |
T |
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| Q |
118 |
aatgttcaaccgtgaccaactttgcgatgcgcactatgagtttcgcgtcacgcaatggccgttccagaaatacttggaaacactcgtctataaaa-catg |
216 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
19546057 |
aatgttcaactgtgaccaacttcgcgatgcgcactatgagtttcgcgtcacgcaatggccgttccagaaatacttggaaacactcgtctataaaaacatg |
19546156 |
T |
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| Q |
217 |
agctctagatcagtgcaagatcatcatatggtgactagacaaaagtagaaacacgattttgaaagatttggagcaaccagagtccttcgagagccaaaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19546157 |
agctctagatcagtgcaagatcatcatatggtgactagacgaaagtagaaacacgattttgaaagatttggagcaaccagagtccttcgagagccaaaaa |
19546256 |
T |
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| Q |
317 |
atcatcaatcggtaaccattggctctgtcataagtttcacacgttcacatatacaatatatcaatggccaatgaataaagattataccaatatatcaatg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19546257 |
atcatcaatcggtaaccattggctctgtcataagtttcacacgttcacatatacaatatatcaatggccaatgaataaagattataccaatatatcaatg |
19546356 |
T |
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| Q |
417 |
gccatatttgatattttcagagtttgaaaacaatcaaaatgtgcatgcttgttttgcatcgtgtgatcttgattagggtcgtctctg |
503 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19546357 |
gccatatttgatattttcagagtttgaaaaaaatcaaaatgtgcatgcttgttttgcatcgtgtgatcttgattagggtcgtctctg |
19546443 |
T |
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