View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7495_low_5 (Length: 474)
Name: NF7495_low_5
Description: NF7495
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7495_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 238 - 460
Target Start/End: Original strand, 17541237 - 17541459
Alignment:
| Q |
238 |
tactgatccgattccttagttcctccaaatgataagtatcgttgttctcatctctgtctactgcaatgtttgctgaccttggaatgttttcatggctgga |
337 |
Q |
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| T |
17541237 |
tactgattcgattccttagttcctccgaatgataagtatcgttgttctcatctccgtctactgcaatgtttgctgaccttggaatgttttcatggctgga |
17541336 |
T |
|
| Q |
338 |
atcaccgacttcaaacattgtttcattttgccctgccctatattgtatctcaaagtcctcctccaaatcactatcttcattagatgaatcaaaattcatt |
437 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17541337 |
atcaccgacttcaaacattgtttcattttgccctgccttatattgtatctcaaagtcctcctccaaatcactatcttcattagatgaatcaaaattcatt |
17541436 |
T |
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| Q |
438 |
ggggactcttcgttaattgtgat |
460 |
Q |
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| T |
17541437 |
ggggactcttcattaattgtgat |
17541459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 17541036 - 17541236
Alignment:
| Q |
1 |
agcaatatattttccaatcacactcttctttcttgcaaattgcacttgcccttaatttcgcactcctctcccatttgatatcacttccccgacggatagt |
100 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |
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| T |
17541036 |
agcaatatattttccagtcacactcttctttgttgcaaattgcacttgcccttaatttcgcactcctctcccatttgatatcacttccctggtgaatagt |
17541135 |
T |
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| Q |
101 |
gaaatccttgacagcagatttaaacatctgaatggtactaaactccattcccaatttcaaatcaacatgaccaaatccaacactttcattgaattgagga |
200 |
Q |
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| T |
17541136 |
gaaatccttgacagcagatttaaacatctgaatggtactaaactccattcccaatttcaaatcaacatgaccaaatccaacactttcattgaattgagga |
17541235 |
T |
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| Q |
201 |
t |
201 |
Q |
| |
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| T |
17541236 |
t |
17541236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 10764518 - 10764422
Alignment:
| Q |
140 |
aaactccattcccaatttcaaatcaacatgaccaaatccaacactttcattgaattgaggataaacaatgttcgtgcttccatcattttcatcatca |
236 |
Q |
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|||||||||||| | || ||| | |||| |||||||||| || ||||||| |||||||||||||| || ||| | |||||||| |||||||||| |
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| T |
10764518 |
aaactccattccaagttccaagtttacatcaccaaatccagcattttcattaaattgaggataaactatattcctatttccatcaccttcatcatca |
10764422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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