View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7496_high_1 (Length: 910)
Name: NF7496_high_1
Description: NF7496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7496_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 746; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 19 - 897
Target Start/End: Original strand, 47486384 - 47487254
Alignment:
| Q |
19 |
atatacttcacttttccttcttccaccaatttcttaagttcacctacctgtaatagaagaaaattgttaacaatgcatctagtgtaataagtcagataat |
118 |
Q |
| |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47486384 |
atatacttcacttttccttcttccaccaacttcataagttcacctacctgtaatagaagaaacttgttaacaatgcatctagtgtaataagtcagataat |
47486483 |
T |
|
| Q |
119 |
gtatattaataagaaataacatatgtgatgcactat--gctcaaaata-aaaaccttaccgtatcctctataggcacagatgtatccactctgtgctgat |
215 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47486484 |
gtatatcaataagaaataacatatgtgatgcactatatgctcaaaatagaaaaccttaccgtatcctctataggcacagatgtatccactctgtgctgat |
47486583 |
T |
|
| Q |
216 |
aatacagatcaatgtattcgacatcaagacgtttcaagctagcttcgcagcatgaacgcacataatccggtgaacccttgattaccataccagaatcatc |
315 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47486584 |
aatacagatcaatgtattcgacatcgagacgtttcaagctagcttcgcagcatgaacgcacataatccggtgaacc-ttgattaccataccagaatcatc |
47486682 |
T |
|
| Q |
316 |
gtttctggctataccgaattttgtagccacctggaccttttctctaggtagttgctttaaagcctagtcaacaaaaccaaataattataaactaaaatta |
415 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47486683 |
gcttctggctataccgaattttgtagccacctggaccttttctctaggtagttgctttaaagcctagtcaacaaaaccaaataattataaactaaaatta |
47486782 |
T |
|
| Q |
416 |
gcatgaagtttcatttgcaatataaaatttagaacattaaagaaattcttggtccgtagttatttgtatgcatgtacctttccaaccaatatttcattac |
515 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47486783 |
gcatgaagtttcatttgcaatataaaatttagaacattaaagaaattcttggtacgtagttatttgtatgcatgtacctttccaaccaatatttcattac |
47486882 |
T |
|
| Q |
516 |
caccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaaataccatcttgctcaggaagaagatc |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47486883 |
caccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaaataccatcttgctcaggaagaagatc |
47486982 |
T |
|
| Q |
616 |
actgtaggctccactgagtcccatacacccaaatcccatttttgaaacctgaaagccttgggttccaagtgtaacatgaggaattagctcggtttgcgtt |
715 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47486983 |
actgtaggctccaccgagtcccatacacccaaatcccatttttgaaacctgaaagccttgggttccaagtgtaacatgaggaattagctcggtttgcatt |
47487082 |
T |
|
| Q |
716 |
gttgccattttggttaatgatgaatgtttgaatgttttctatttttatgacttcaccatagaattttccatgattgattatattatatttttgaccaagt |
815 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
47487083 |
gttgccattttggttaatgatgaatg---------------tttttatgacttcaccatagaatttttcatgattgattatattatatttttgaccaagt |
47487167 |
T |
|
| Q |
816 |
tgatgatgaatgattagattttcaga-----attgcatgtcttagtttccatttgaagccttaatatattatatacggatatgatat |
897 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47487168 |
tgatgatgaatgattagaatttcagaattatattgcatgtcttagtttccatttgaagccttaatatattatatacggatatgatat |
47487254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 176 - 400
Target Start/End: Original strand, 47477253 - 47477474
Alignment:
| Q |
176 |
gtatcctctataggcacagatgtatccactctgtgctgataatacagatcaatgtattcgacatcaagacgtttcaagctagcttcgcagcatgaacgca |
275 |
Q |
| |
|
|||||||| |||||||| | |||||| ||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
47477253 |
gtatcctcaataggcacggttgtatcgactctgtgctgataatagagatcaatgtattcaacattgagacgtttcaagctagcttcgcagcttgaacgca |
47477352 |
T |
|
| Q |
276 |
cataatccggtgaacccttgattaccataccagaatcatcgtttctggctataccgaattttgtagccacctggaccttttctctaggtagttgctttaa |
375 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||| | | | |||||| |||||| ||||||||||||||||||| ||||||||| || ||||||||||| |
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|
| T |
47477353 |
catactccggtgaacctttgatgcccatacc---accgccacttctggatataccaaattttgtagccacctggatcttttctctgggcagttgctttaa |
47477449 |
T |
|
| Q |
376 |
agcctagtcaacaaaaccaaataat |
400 |
Q |
| |
|
|||||||||||||||| |||||||| |
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|
| T |
47477450 |
agcctagtcaacaaaatcaaataat |
47477474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 490 - 686
Target Start/End: Original strand, 47474191 - 47474387
Alignment:
| Q |
490 |
tacctttccaaccaatatttcattaccaccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaa |
589 |
Q |
| |
|
||||||||||| || ||||||||| ||||| ||||||| | ||||||||||||||| ||||| | ||||||||| || ||||| ||||||| |||| |
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|
| T |
47474191 |
tacctttccaagtaaaatttcattagcaccactacctccatagatatcagcagtatcaaaaaaagtaacgcctttactgaaagcatagttaattacggaa |
47474290 |
T |
|
| Q |
590 |
ataccatcttgctcaggaagaagatcactgtaggctccactgagtcccatacacccaaatcccatttttgaaacctgaaagccttgggttccaagtg |
686 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||| |||||| |||||||||||||||| || |||| |||||||||||||||||||||||||||||||| |
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|
| T |
47474291 |
ataccatcttgttcaggaagaggatcattgtaagctccagtgagtcccatacacccgaaacccaattttgaaacctgaaagccttgggttccaagtg |
47474387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 490 - 645
Target Start/End: Original strand, 47477683 - 47477838
Alignment:
| Q |
490 |
tacctttccaaccaatatttcattaccaccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaa |
589 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||| ||||||||||||||| || ||||| ||||||||||||||||| ||||||| ||||||| |||| |
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|
| T |
47477683 |
tacctttccaaccaaaatttcattcccaccatcgagtccataaacatcagcggtgtcaaaaaaagtgatgcctttactgaatgcatgattaattacggaa |
47477782 |
T |
|
| Q |
590 |
ataccatcttgctcaggaagaagatcactgtaggctccactgagtcccatacaccc |
645 |
Q |
| |
|
|| ||| || ||||||||| ||||| |||| |||||||||| |||||||||| |
|
|
| T |
47477783 |
atgccaatttcttcaggaagaggatcattgtatcctccactgagggccatacaccc |
47477838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 176 - 397
Target Start/End: Original strand, 47473919 - 47474149
Alignment:
| Q |
176 |
gtatcctctataggcacagatgtatccactctgtgctgataatacagatcaatgtattcgacatcaagacgtttcaagctagcttcgcagcatgaacgca |
275 |
Q |
| |
|
|||||||| |||| |||||| ||||| | ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| || || || |||| |
|
|
| T |
47473919 |
gtatcctcaatagacacagaagtatcaattctgtgctgataatagagatcaatgtattcaacatcgagacgtttcaagctagcttcacaacacgagcgca |
47474018 |
T |
|
| Q |
276 |
cataatccggtgaacccttgat--taccat-------accagaatcatcgtttctggctataccgaattttgtagccacctggaccttttctctaggtag |
366 |
Q |
| |
|
| || || |||||||||||||| | ||| || |||| | || |||| | |||||| ||||||||||||| ||||| ||||||||| || | |
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|
| T |
47474019 |
cgtactcaggtgaacccttgatggtcacatcagcgagacgagaaacgtctcttctagatataccaaattttgtagccaactggatcttttctctgggcaa |
47474118 |
T |
|
| Q |
367 |
ttgctttaaagcctagtcaacaaaaccaaat |
397 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| |
|
|
| T |
47474119 |
ttgctttaatgcctagtcaacaaaatcaaat |
47474149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 47473669 - 47473768
Alignment:
| Q |
19 |
atatacttcacttttccttcttccaccaatttcttaagttcacctacctgtaatagaagaaaattgttaacaatgcatctagtgtaataagtcagataat |
118 |
Q |
| |
|
|||||||| |||||||| |||||||||| |||||||||||||||||||| ||| | || ||| |||||||||| ||||||||| |||||| || ||||| |
|
|
| T |
47473669 |
atatacttaacttttccctcttccaccagtttcttaagttcacctacctataacacaacaaacttgttaacaacacatctagtgaaataagccaaataat |
47473768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 47476967 - 47477066
Alignment:
| Q |
19 |
atatacttcacttttccttcttccaccaatttcttaagttcacctacctgtaatagaagaaaattgttaacaatgcatctagtgtaataagtcagataat |
118 |
Q |
| |
|
||||| || |||||||| |||||||||| |||||||||||||||||||| || | || ||| |||||||||| ||||||||| |||||| || ||||| |
|
|
| T |
47476967 |
atatatttaacttttccctcttccaccagtttcttaagttcacctacctatagcacaacaaacttgttaacaacacatctagtgaaataagccaaataat |
47477066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 662 - 711
Target Start/End: Original strand, 47477981 - 47478030
Alignment:
| Q |
662 |
acctgaaagccttgggttccaagtgtaacatgaggaattagctcggtttg |
711 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
47477981 |
acctgaaagccttgggttccaagtgagacatgaggaattagttcagtttg |
47478030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 785
Target Start/End: Complemental strand, 37109875 - 37109846
Alignment:
| Q |
756 |
atttttatgacttcaccatagaattttcca |
785 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37109875 |
atttttatgacttcaccatagaattttcca |
37109846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 756 - 785
Target Start/End: Complemental strand, 37203086 - 37203057
Alignment:
| Q |
756 |
atttttatgacttcaccatagaattttcca |
785 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
37203086 |
atttttatgacttcaccatagaattttcca |
37203057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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