View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7496_high_3 (Length: 352)
Name: NF7496_high_3
Description: NF7496
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7496_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 39602534 - 39602203
Alignment:
| Q |
13 |
aatatgaagttagatgttatatttgtgtcagaggagatttgcaaatggcattactgtttatatactaacttttgaggtgaggaaatggaatgttctgaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39602534 |
aatatgaagttagatgttatatttgtgtcagaggagatttgcaaatggcattactgtttatatactaacttttgaggtgaggaaatggaatgttctgaag |
39602435 |
T |
|
| Q |
113 |
atgatgaattaatcgccagaaataacagaaacatatttacaatacaatatatattgtatttttgcaatttatatttgtgcctggtgacacattgctctct |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39602434 |
atgatgaattaatcgccagaaataacagaaacata-ttacaatacaatatatattgtatttttgcaatttatatttgtgcctggtgacacattgctctct |
39602336 |
T |
|
| Q |
213 |
cgtttgcaaactaactttcttaagagattttggatgtcactatctaaagcgtgtaaactaagctttgcgaagattagaatgtcaagatgaatgaatggtc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39602335 |
cgtttgcaaactaactttcttaagagattttggatgtcactatctaaagcgtgt-aactcagctttgcgaagattagaatgtcaagatgaatgaatggtc |
39602237 |
T |
|
| Q |
313 |
acacaagatgagataggattgagaacacaataat |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
39602236 |
acacaagatgagataggattgagaacacaataat |
39602203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University