View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7497_high_4 (Length: 223)

Name: NF7497_high_4
Description: NF7497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7497_high_4
NF7497_high_4
[»] chr7 (18 HSPs)
chr7 (15-211)||(10494506-10494702)
chr7 (15-206)||(13333593-13333784)
chr7 (15-194)||(8654290-8654469)
chr7 (16-211)||(8667260-8667455)
chr7 (19-211)||(8659207-8659399)
chr7 (43-191)||(1301328-1301476)
chr7 (34-211)||(17260100-17260277)
chr7 (34-201)||(17267798-17267965)
chr7 (43-187)||(3147132-3147276)
chr7 (55-187)||(8646757-8646889)
chr7 (32-211)||(27831007-27831186)
chr7 (43-187)||(6789380-6789524)
chr7 (146-187)||(8545604-8545645)
chr7 (146-203)||(8576297-8576354)
chr7 (22-92)||(8616528-8616598)
chr7 (146-199)||(8570282-8570335)
chr7 (146-211)||(29581973-29582038)
chr7 (146-182)||(7877894-7877930)
[»] chr4 (3 HSPs)
chr4 (15-194)||(9336040-9336219)
chr4 (34-89)||(30775111-30775166)
chr4 (17-86)||(35132299-35132368)
[»] chr2 (7 HSPs)
chr2 (19-211)||(16657649-16657841)
chr2 (20-211)||(7542071-7542262)
chr2 (34-211)||(14703267-14703444)
chr2 (148-211)||(12234662-12234725)
chr2 (19-184)||(43625256-43625421)
chr2 (142-193)||(11999374-11999425)
chr2 (142-193)||(12245556-12245607)
[»] chr1 (3 HSPs)
chr1 (21-193)||(4678708-4678879)
chr1 (34-187)||(15594893-15595046)
chr1 (37-77)||(34467051-34467091)
[»] chr5 (1 HSPs)
chr5 (43-187)||(28219786-28219930)
[»] chr8 (1 HSPs)
chr8 (43-185)||(43744684-43744826)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 10494702 - 10494506
Alignment:
Q  15 aatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10494702 aatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacc 10494603  T
Q  115 tcaacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtcca 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10494602 tcaacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtcca 10494506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 13333784 - 13333593
Alignment:
Q  15 aatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacc 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  13333784 aatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatctact 13333685  T
Q  115 tcaacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgat 206  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13333684 tcaacagtggtgacaaaagaaaaggagagtatccttttttccctctcacaggcagttctcaacctccttaaggattttgggttcccactgat 13333593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 8654290 - 8654469
Alignment:
Q  15 aatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacc 114  Q
    |||||| ||||||||  |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8654290 aatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaaagtcgattcccataaataaagcatctacc 8654389  T
Q  115 tcaacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgg 194  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8654390 tcaacagtggtgacaaaagtaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgg 8654469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 8667260 - 8667455
Alignment:
Q  16 atattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacct 115  Q
    ||||||||||||||  |||||||||| || |||| |||||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||||| ||||    
T  8667260 atattcatacactcattgaaaaagtccatgttaagttcctcaaatttagcacgagtaattgatgaacaaaagtcgattcccgtaaataaagcatctacct 8667359  T
Q  116 caacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtcca 211  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||    
T  8667360 caacagtggtaacaaaagcaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgggttctgactgatgtcca 8667455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 8659207 - 8659399
Alignment:
Q  19 ttcatacactcgatgaaaaag-tctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctca 117  Q
    ||||||||||| || |||||| || ||||| |||||||||||  |||||||||||||| ||||| | ||||| ||||||  |||||||| ||||||||||    
T  8659207 ttcatacactc-attaaaaagatccatattcatttcctcaaacctggcacgagtgattaatgaacagaagtctattccctgaaataaagaatcgacctca 8659305  T
Q  118 acggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtcca 211  Q
    || ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||    
T  8659306 acagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacaggcagttctcaacctccttaaggattttgggttaccactaatgtcca 8659399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 43 - 191
Target Start/End: Original strand, 1301328 - 1301476
Alignment:
Q  43 atattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaagaaaaagaga 142  Q
    ||||||||||||||||| ||||||||||||||| ||||| | ||||||||||||  |||||||| ||||||||||||||||||||| |||| ||||||||    
T  1301328 atattaatttcctcaaacttggcacgagtgattaatgaacagaagtcgattccctgaaataaagaatcgacctcaacggtggtgactaaagcaaaagaga 1301427  T
Q  143 gtatcctttttgccctctcacaggcagttctcaacctccttaaggattt 191  Q
    || ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  1301428 gtgtcctttttgccctctcacacgcaattctcaacctccttaaggattt 1301476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 17260100 - 17260277
Alignment:
Q  34 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaag 133  Q
    |||| ||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |  |  ||| |||||||||| || ||||||||  |||| ||| | |    
T  17260100 aaaaggtccatattgatttcttcaaacttggcacgagtgattgacgaagaaaaattaacacccttaaataaagcgtctacctcaacattggtcacagagg 17260199  T
Q  134 aaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtcca 211  Q
     |||||| ||| ||||||||||  | ||||| |||||||||||||||||||||| |||||| |||||| | |||||||    
T  17260200 caaaagaaagtgtcctttttgctttttcacatgcagttctcaacctccttaaggcttttgggttcccaataatgtcca 17260277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 34 - 201
Target Start/End: Original strand, 17267798 - 17267965
Alignment:
Q  34 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaag 133  Q
    |||| ||| ||||| ||||||||||| ||||||||||||||||| |||||||| || |  ||| |||||||||| || ||||||||  |||| ||| | |    
T  17267798 aaaaggtccatattgatttcctcaaacttggcacgagtgattgacgaagaaaaatcaacacccttaaataaagcgtctacctcaacattggtcacagagg 17267897  T
Q  134 aaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattccca 201  Q
      ||||| ||| ||||||||||  | ||||| ||||||||||||||||| | || |||||| ||||||    
T  17267898 cgaaagaaagtgtcctttttgctttttcacatgcagttctcaacctcctcatggcttttgggttccca 17267965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 3147132 - 3147276
Alignment:
Q  43 atattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaagaaaaagaga 142  Q
    ||||| ||||||||||| ||||||||||||||||||||| | ||||| | ||||  |||||||| ||| | ||||| ||||||||  | || |||||| |    
T  3147132 atattgatttcctcaaacttggcacgagtgattgatgaaaataagtcaaatccctgaaataaagaatctatctcaatggtggtgatgacagcaaaagata 3147231  T
Q  143 gtatcctttttgccctctcacaggcagttctcaacctccttaagg 187  Q
    |||| | |||||| || ||||| || ||| |||||||||||||||    
T  3147232 gtattcgttttgctctttcacacgccgttttcaacctccttaagg 3147276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 8646757 - 8646889
Alignment:
Q  55 tcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaagaaaaagagagtatcctttttg 154  Q
    |||||||||||||||||||||||||||  |||||| || ||  ||||||||| ||| |  |||| |||||||  | ||| |||||| ||| |||||||||    
T  8646757 tcaaatttggcacgagtgattgatgaaataaagtcaatgccattaaataaagaatctaattcaatggtggtgcaagaagcaaaagatagtgtcctttttg 8646856  T
Q  155 ccctctcacaggcagttctcaacctccttaagg 187  Q
    | ||||| || || |||||||||||||||||||    
T  8646857 ctctctcgcatgccgttctcaacctccttaagg 8646889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 27831186 - 27831007
Alignment:
Q  32 tgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaa 131  Q
    |||||| ||| ||||| ||||||||||| || |||||||||||   |||| | ||||| || |||  |||||| ||||| | |||||  || ||| |||     
T  27831186 tgaaaaggtccatattgatttcctcaaactttgcacgagtgatcattgaaaagaagtcaatgccctcaaataaggcatctatctcaatagtagtgtcaac 27831087  T
Q  132 agaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtcca 211  Q
    ||||||||||||| ||||||||||| |||||||    ||||||| |||||| |||| | |||| |||||||| |||||||    
T  27831086 agaaaaagagagtgtcctttttgccttctcacattaggttctcagcctcctcaaggctcttgggttcccactaatgtcca 27831007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 6789380 - 6789524
Alignment:
Q  43 atattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaagaaaaagaga 142  Q
    ||||| ||||||||||| ||||| ||||| | |||||||   |||||||| |||  ||||||||  || |||||||  || ||||| | |  ||||||||    
T  6789380 atattgatttcctcaaacttggcccgagtaagtgatgaaatgaagtcgatgccctgaaataaagagtctacctcaatagtagtgacgacaacaaaagaga 6789479  T
Q  143 gtatcctttttgccctctcacaggcagttctcaacctccttaagg 187  Q
    ||| |||||| ||||| ||||| |||||||||||||| |||||||    
T  6789480 gtacccttttggccctttcacacgcagttctcaaccttcttaagg 6789524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 8545604 - 8545645
Alignment:
Q  146 tcctttttgccctctcacaggcagttctcaacctccttaagg 187  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  8545604 tcctttttgccttctcacaggcagttctcaacctcctcaagg 8545645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 8576297 - 8576354
Alignment:
Q  146 tcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccact 203  Q
    ||||||||||| | ||||| |||||||||||||||||||||| ||||| |||| ||||    
T  8576297 tcctttttgccttttcacaagcagttctcaacctccttaaggcttttgaattctcact 8576354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 8616528 - 8616598
Alignment:
Q  22 atacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgat 92  Q
    ||||||||| | |||| ||| ||||| ||||||||||| ||  ||||||||||||||||||| || |||||    
T  8616528 atacactcgttaaaaaggtccatattgatttcctcaaacttaacacgagtgattgatgaagagaaatcgat 8616598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 8570282 - 8570335
Alignment:
Q  146 tcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcc 199  Q
    ||||||||||||||||||| || ||||| |||||||| |||| |||||| ||||    
T  8570282 tcctttttgccctctcacaagctgttcttaacctcctcaaggcttttgggttcc 8570335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 29582038 - 29581973
Alignment:
Q  146 tcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtcca 211  Q
    |||| |||||||||||||| || ||||||| | ||||||| | |||||| |||||||| |||||||    
T  29582038 tcctctttgccctctcacaagctgttctcagcttccttaaagcttttgggttcccactaatgtcca 29581973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 7877930 - 7877894
Alignment:
Q  146 tcctttttgccctctcacaggcagttctcaacctcct 182  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  7877930 tccttttagccctctcacatgcagttctcaacctcct 7877894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 9336219 - 9336040
Alignment:
Q  15 aatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacc 114  Q
    |||||||||||||||  |||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9336219 aatattcatacactcattgaaaaagtccatgttaagttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatctacc 9336120  T
Q  115 tcaacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgg 194  Q
    ||||| ||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336119 tcaacagtggtaacaaaagcaaaagacagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgg 9336040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 89
Target Start/End: Original strand, 30775111 - 30775166
Alignment:
Q  34 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtc 89  Q
    |||| ||| ||||| ||||||||||| ||| |||||||||||||||||||||||||    
T  30775111 aaaaggtccatattgatttcctcaaacttgacacgagtgattgatgaagaaaagtc 30775166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 35132299 - 35132368
Alignment:
Q  17 tattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaa 86  Q
    |||||||||||||  | |||| ||||  ||| ||||||||||| ||||| ||| ||||||||||||||||    
T  35132299 tattcatacactcattaaaaaggtctgcattcatttcctcaaacttggcgcgattgattgatgaagaaaa 35132368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 16657841 - 16657649
Alignment:
Q  19 ttcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaa 118  Q
    |||||||||||  ||||||  || ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||  |||||||| ||| |||||||    
T  16657841 ttcatacactcattgaaaagatccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctcaa 16657742  T
Q  119 cggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtcca 211  Q
    | ||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||||| |||| | |||  |||||||| |||||||    
T  16657741 cagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttgagttcccacttatgtcca 16657649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 7542071 - 7542262
Alignment:
Q  20 tcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaac 119  Q
    ||||||||||| | ||||  || ||||| || |||||||| ||||| | | |||| |||||||||||||| || ||   |||||||| ||| |||||||     
T  7542071 tcatacactcgttaaaaagatccatattcatctcctcaaacttggccctattgatcgatgaagaaaagtcaatgccttgaaataaagaatctacctcaat 7542170  T
Q  120 ggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtcca 211  Q
     ||||  |||| |   ||||| |||   ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||    
T  7542171 agtggcaacaacaaggaaagaaagtgatctttttgccctctcacaagcagttctcaacctcctcaaggcttttggattcccactaatgtcca 7542262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 14703267 - 14703444
Alignment:
Q  34 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaag 133  Q
    |||||||| ||||| ||||| ||||| ||||| | | |||| |||||||||||||| || |    |||||||||||| |||||||  |||| |||||       
T  14703267 aaaaagtccatattcatttcttcaaacttggccctattgatcgatgaagaaaagtcaatgcattgaaataaagcatctacctcaatagtggcgacaactt 14703366  T
Q  134 aaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtcca 211  Q
      ||||| ||| | |||||||||||||| || || |||||||| |||||||||| ||||||||| ||||| |||||||    
T  14703367 ggaaagaaagtgttctttttgccctctcgcaagcggttctcaagctccttaaggcttttggatttccactaatgtcca 14703444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 12234662 - 12234725
Alignment:
Q  148 ctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtcca 211  Q
    ||||||||||||||||| |||||||| |||||||| |||| ||||||||| ||||| |||||||    
T  12234662 ctttttgccctctcacaagcagttcttaacctcctcaaggcttttggatttccactcatgtcca 12234725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 43625256 - 43625421
Alignment:
Q  19 ttcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaa 118  Q
    |||| ||||||| ||||||  || ||||| ||||| ||||||||||||||||||||||||||| | ||||| || ||    ||||||| ||| |||||||    
T  43625256 ttcaaacactcgttgaaaagatccatatttatttcatcaaatttggcacgagtgattgatgaaaagaagtcaataccacggaataaagaatctacctcaa 43625355  T
Q  119 cggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctcctta 184  Q
      ||| |||   ||| |||||| ||| |||||||| | ||||| || || ||||||||||| ||||    
T  43625356 tagtgctgaacgaagcaaaagacagtgtcctttttcctctctcgcatgccgttctcaaccttctta 43625421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 11999374 - 11999425
Alignment:
Q  142 agtatcctttttgccctctcacaggcagttctcaacctccttaaggattttg 193  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||| |||||    
T  11999374 agtattctttttgccctctcacaagcagttctcaacctcctcaaggcttttg 11999425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 12245607 - 12245556
Alignment:
Q  142 agtatcctttttgccctctcacaggcagttctcaacctccttaaggattttg 193  Q
    ||||| ||||||||||||||||| ||||||||||| ||||| |||| |||||    
T  12245607 agtattctttttgccctctcacaagcagttctcaatctcctcaaggcttttg 12245556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 4678879 - 4678708
Alignment:
Q  21 catacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacg 120  Q
    |||||||||| |||||| ||| ||||||||||||||||| ||||||||||| || |||||||||||||| ||||||  |||||||| ||| | ||||||     
T  4678879 catacactcgttgaaaaggtccatattaatttcctcaaacttggcacgagtaatagatgaagaaaagtctattccctgaaataaagaatcta-ctcaaca 4678781  T
Q  121 gtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttg 193  Q
    ||||||||||| |  ||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||||    
T  4678780 gtggtgacaaaggcgaaagagagtgtcctctttgccctctcgcaggcagttctcaacctccttaagggttttg 4678708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 187
Target Start/End: Original strand, 15594893 - 15595046
Alignment:
Q  34 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaag 133  Q
    |||||||| || || ||||| ||||| |||| |||||| |  |||||| | ||||| || ||  ||||||||  ||| ||||||| ||| ||||||  ||    
T  15594893 aaaaagtccatgttgatttcttcaaacttggaacgagtaaccgatgaaaagaagtcaataccgttaaataaacaatctacctcaatggtagtgacagtag 15594992  T
Q  134 aaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaagg 187  Q
     ||||||||||| |||||||||||| || || ||||||||||| ||||| ||||    
T  15594993 taaaagagagtaccctttttgccctttcgcacgcagttctcaatctcctcaagg 15595046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 34467091 - 34467051
Alignment:
Q  37 aagtctatattaatttcctcaaatttggcacgagtgattga 77  Q
    ||||| ||||| ||||||||||| |||||||||||||||||    
T  34467091 aagtccatattgatttcctcaaacttggcacgagtgattga 34467051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 28219786 - 28219930
Alignment:
Q  43 atattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaagaaaaagaga 142  Q
    ||||| ||||||||||| || |||||||| ||||||||| | || || || ||   |||||||| ||| ||||||| ||||| ||||| || |||||| |    
T  28219786 atattgatttcctcaaacttagcacgagtaattgatgaaaagaaatcaatgccttcaaataaagaatctacctcaatggtggcgacaacagcaaaagata 28219885  T
Q  143 gtatcctttttgccctctcacaggcagttctcaacctccttaagg 187  Q
    || |||||||||| ||||  || || |||||||||||||||||||    
T  28219886 gtgtcctttttgctctcttgcacgctgttctcaacctccttaagg 28219930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 185
Target Start/End: Original strand, 43744684 - 43744826
Alignment:
Q  43 atattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaagaaaaagaga 142  Q
    ||||| ||||||||||| || | ||||||||||| || | | || || || |||  |||||||| ||| |||||||  |||||||||| || |||||| |    
T  43744684 atattgatttcctcaaacttagtacgagtgattgttgtaaagaaatcaatgccctcaaataaagaatctacctcaatagtggtgacaacagcaaaagata 43744783  T
Q  143 gtatcctttttgccctctcacaggcagttctcaacctccttaa 185  Q
     | |||||||||| || || || || |||||||||||||||||    
T  43744784 atgtcctttttgctctttcgcatgctgttctcaacctccttaa 43744826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University