View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7497_low_1 (Length: 532)

Name: NF7497_low_1
Description: NF7497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7497_low_1
NF7497_low_1
[»] chr6 (14 HSPs)
chr6 (19-106)||(16655733-16655820)
chr6 (19-106)||(16558484-16558571)
chr6 (73-136)||(16778799-16778862)
chr6 (181-247)||(16784790-16784856)
chr6 (19-57)||(16870338-16870376)
chr6 (19-55)||(16784994-16785030)
chr6 (81-128)||(17067115-17067162)
chr6 (19-57)||(17095709-17095747)
chr6 (22-55)||(16778898-16778931)
chr6 (22-57)||(16794930-16794965)
chr6 (22-57)||(17067201-17067236)
chr6 (84-118)||(16794860-16794894)
chr6 (26-55)||(16841550-16841579)
chr6 (384-424)||(17066854-17066894)
[»] chr3 (5 HSPs)
chr3 (75-136)||(38941828-38941889)
chr3 (93-156)||(7055753-7055816)
chr3 (22-57)||(38941757-38941792)
chr3 (21-54)||(7055684-7055717)
chr3 (385-421)||(7056081-7056117)
[»] scaffold0133 (6 HSPs)
scaffold0133 (19-136)||(6132-6258)
scaffold0133 (84-136)||(10480-10532)
scaffold0133 (73-158)||(15746-15831)
scaffold0133 (463-523)||(5723-5782)
scaffold0133 (20-57)||(10568-10605)
scaffold0133 (22-55)||(15867-15900)
[»] scaffold0144 (1 HSPs)
scaffold0144 (73-160)||(7362-7449)
[»] scaffold0256 (3 HSPs)
scaffold0256 (96-160)||(6764-6828)
scaffold0256 (19-55)||(6881-6917)
scaffold0256 (97-160)||(6609-6672)
[»] chr2 (2 HSPs)
chr2 (19-57)||(20151581-20151619)
chr2 (84-159)||(20151481-20151557)
[»] chr8 (1 HSPs)
chr8 (81-118)||(13375738-13375775)


Alignment Details
Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 16655820 - 16655733
Alignment:
Q  19 aataggtgaagattggcataagatagctcacattcctgatttgccaccttttgtagaaccaacaaaaccaacaatttgtggtaattta 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||||||    
T  16655820 aataggtgaagattggcataagatagctcacattcctgatttgccatcttttgaagaaacaacaaagccaacaatttgtggtaattta 16655733  T

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Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 16558484 - 16558571
Alignment:
Q  19 aataggtgaagattggcataagatagctcacattcctgatttgccaccttttgtagaaccaacaaaaccaacaatttgtggtaattta 106  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||||    
T  16558484 aataggtgacgattggcataagatagctcacattcctgatttgccatcttctgtggaaacaacaaaaccaacaatttgtggtaattta 16558571  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 16778862 - 16778799
Alignment:
Q  73 agaaccaacaaaaccaacaatttgtggtaatttaattgaatgaatctctttattttattccttt 136  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||    
T  16778862 agaaccaacaaaaccaacaattagtggtaattgatttgaatgaatctcttaattttattccttt 16778799  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 16784856 - 16784790
Alignment:
Q  181 aacaatgggtgcagtgaatatcaaatcagcatggaagcaattctggaaccccccagctcaagaccct 247  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||| ||| |||| ||||| |||||    
T  16784856 aacaatgtgtgcagagaatatcaaatcagcatggaagcaattctggcaccgcccatctcaataccct 16784790  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 16870338 - 16870376
Alignment:
Q  19 aataggtgaagattggcataagatagctcacattcctga 57  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16870338 aataggtgaagattggcataagatagctcacattcctga 16870376  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 16785030 - 16784994
Alignment:
Q  19 aataggtgaagattggcataagatagctcacattcct 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  16785030 aataggtgaagattggcataagatagctcacattcct 16784994  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 17067162 - 17067115
Alignment:
Q  81 caaaaccaacaatttgtggtaatttaattgaatgaatctctttatttt 128  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||    
T  17067162 caaaaccaacaatttgtggtaatttaatttaacgaatctcttaatttt 17067115  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 17095747 - 17095709
Alignment:
Q  19 aataggtgaagattggcataagatagctcacattcctga 57  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  17095747 aataggtgaagattggcattagatagctcacattcctga 17095709  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 16778931 - 16778898
Alignment:
Q  22 aggtgaagattggcataagatagctcacattcct 55  Q
    ||||||||||||||||||||||||||||||||||    
T  16778931 aggtgaagattggcataagatagctcacattcct 16778898  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 16794965 - 16794930
Alignment:
Q  22 aggtgaagattggcataagatagctcacattcctga 57  Q
    |||||||||||||||||||||||||||| |||||||    
T  16794965 aggtgaagattggcataagatagctcacgttcctga 16794930  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 17067236 - 17067201
Alignment:
Q  22 aggtgaagattggcataagatagctcacattcctga 57  Q
    |||||||||||||||||| |||||||||||||||||    
T  17067236 aggtgaagattggcataaaatagctcacattcctga 17067201  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 118
Target Start/End: Complemental strand, 16794894 - 16794860
Alignment:
Q  84 aaccaacaatttgtggtaatttaattgaatgaatc 118  Q
    ||||||||||||||||||||||||||||| |||||    
T  16794894 aaccaacaatttgtggtaatttaattgaacgaatc 16794860  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 55
Target Start/End: Complemental strand, 16841579 - 16841550
Alignment:
Q  26 gaagattggcataagatagctcacattcct 55  Q
    ||||||||||||||||||||||||||||||    
T  16841579 gaagattggcataagatagctcacattcct 16841550  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 424
Target Start/End: Complemental strand, 17066894 - 17066854
Alignment:
Q  384 catcccttcttattaaaggaatgagttctctgtttagtaga 424  Q
    |||||||||||||||||||||||  | ||||||||||||||    
T  17066894 catcccttcttattaaaggaatgcctgctctgtttagtaga 17066854  T

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Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 38941828 - 38941889
Alignment:
Q  75 aaccaacaaaaccaacaatttgtggtaatttaattgaatgaatctctttattttattccttt 136  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38941828 aaccaacaaaaccaacaatttgtggtaacttaattgaatgaatctctttattttattccttt 38941889  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 156
Target Start/End: Original strand, 7055753 - 7055816
Alignment:
Q  93 tttgtggtaatttaattgaatgaatctctttattttattcctttatgttttttcttaatatatc 156  Q
    ||||||||||||||||| ||| |||| |||||| |||||||||| | |||||||||| ||||||    
T  7055753 tttgtggtaatttaatttaatcaatccctttatattattcctttctcttttttcttactatatc 7055816  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 57
Target Start/End: Original strand, 38941757 - 38941792
Alignment:
Q  22 aggtgaagattggcataagatagctcacattcctga 57  Q
    ||||||||||||||||||||||||||||||||||||    
T  38941757 aggtgaagattggcataagatagctcacattcctga 38941792  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 7055684 - 7055717
Alignment:
Q  21 taggtgaagattggcataagatagctcacattcc 54  Q
    ||||||||||||||||||||||||||||||||||    
T  7055684 taggtgaagattggcataagatagctcacattcc 7055717  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 385 - 421
Target Start/End: Original strand, 7056081 - 7056117
Alignment:
Q  385 atcccttcttattaaaggaatgagttctctgtttagt 421  Q
    |||||||||||||||||||| || |||||||||||||    
T  7056081 atcccttcttattaaaggaaagacttctctgtttagt 7056117  T

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Target: scaffold0133 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 6258 - 6132
Alignment:
Q  19 aataggtgaagattggcataagatagctcacattcctgatttgccaccttttgtagaa---------ccaacaaaaccaacaatttgtggtaatttaatt 109  Q
    |||||||||||||||||||||||||||||||||||||   | |||  ||| |||||||         ||||||||| |||||||||||||||||||||||    
T  6258 aataggtgaagattggcataagatagctcacattcctatatcgccttcttctgtagaaacaacaacaccaacaaaatcaacaatttgtggtaatttaatt 6159  T
Q  110 gaatgaatctctttattttattccttt 136  Q
     |||||||||||||| |||||||||||    
T  6158 taatgaatctctttagtttattccttt 6132  T

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Target: scaffold0133; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 84 - 136
Target Start/End: Complemental strand, 10532 - 10480
Alignment:
Q  84 aaccaacaatttgtggtaatttaattgaatgaatctctttattttattccttt 136  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10532 aaccaacaattagtggtaatttaattgaatgaatctctttattttattccttt 10480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 15831 - 15746
Alignment:
Q  73 agaaccaacaaaaccaacaatttgtggtaatttaattgaatgaatctctttattttattcctttatgttttttcttaatatatcaa 158  Q
    ||||||||||||| |||||| | ||||||||| |||| ||||| |||||| |||||||||||||   |||||||||| ||||||||    
T  15831 agaaccaacaaaaacaacaagtagtggtaattgaattaaatgagtctcttaattttattccttttgcttttttcttactatatcaa 15746  T

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Target: scaffold0133; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 463 - 523
Target Start/End: Complemental strand, 5782 - 5723
Alignment:
Q  463 attatttggttaggaatctgaaatatcaactatctattgaagatgtgtcctatatattctt 523  Q
    ||||||||||||||||| | |||| ||||||||||| ||||||||||||||||||||||||    
T  5782 attatttggttaggaatat-aaatttcaactatctaatgaagatgtgtcctatatattctt 5723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 10605 - 10568
Alignment:
Q  20 ataggtgaagattggcataagatagctcacattcctga 57  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10605 ataggtgaagattggcataagatagctcacattcctga 10568  T

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Target: scaffold0133; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 15900 - 15867
Alignment:
Q  22 aggtgaagattggcataagatagctcacattcct 55  Q
    ||||||||||||||||||||||||||||||||||    
T  15900 aggtgaagattggcataagatagctcacattcct 15867  T

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Target: scaffold0144 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 7449 - 7362
Alignment:
Q  73 agaaccaacaaaaccaacaatttgtggtaatttaattgaatgaatctctttattttattcctttatgttttttcttaatatatcaaat 160  Q
    ||||||||||||| |||||| | ||||||||| | |||||||||||||||  ||||||||||||   |||||||||| || |||||||    
T  7449 agaaccaacaaaaacaacaagtagtggtaattgatttgaatgaatctcttatttttattccttttgcttttttcttactacatcaaat 7362  T

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Target: scaffold0256 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 6828 - 6764
Alignment:
Q  96 gtggtaatttaattgaatgaatctctttattttattcctttatgttttttcttaatatatcaaat 160  Q
    ||||||||||||||||||||||||||| |||||||| ||||   ||||||| || ||||||||||    
T  6828 gtggtaatttaattgaatgaatctcttaattttatttctttcgcttttttcatactatatcaaat 6764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 6917 - 6881
Alignment:
Q  19 aataggtgaagattggcataagatagctcacattcct 55  Q
    |||||||||||||||||||||||||||||||||||||    
T  6917 aataggtgaagattggcataagatagctcacattcct 6881  T

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Target: scaffold0256; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 6672 - 6609
Alignment:
Q  97 tggtaatttaattgaatgaatctctttattttattcctttatgttttttcttaatatatcaaat 160  Q
    |||||||||||||||||||||||||| ||| ||||||||| | || | ||||| ||||||||||    
T  6672 tggtaatttaattgaatgaatctcttaattatattcctttctattatatcttactatatcaaat 6609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 20151619 - 20151581
Alignment:
Q  19 aataggtgaagattggcataagatagctcacattcctga 57  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  20151619 aataggtgaagattggcataagatagctaacattcctga 20151581  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 20151557 - 20151481
Alignment:
Q  84 aaccaacaatttgtggtaatttaattgaatgaatctctttattttattcctttat-gttttttcttaatatatcaaa 159  Q
    |||||||| ||| ||||||||||||| || |||||||||| ||||||| || | |  |||||||||| |||||||||    
T  20151557 aaccaacattttttggtaatttaatttaacgaatctctttgttttatttctatctctttttttcttactatatcaaa 20151481  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 13375775 - 13375738
Alignment:
Q  81 caaaaccaacaatttgtggtaatttaattgaatgaatc 118  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  13375775 caaaaccaacattttgtggtaatttaatttaatgaatc 13375738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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