View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7497_low_2 (Length: 501)
Name: NF7497_low_2
Description: NF7497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7497_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 10148681 - 10148560
Alignment:
| Q |
110 |
attatgatcgtgcaaatcaattcaaattatttatatggtatcaaattctactcattttcatttgaaaggatacataattgctttaat-aaacactttaac |
208 |
Q |
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| T |
10148681 |
attatgatcgtgcaaatcaattcaaattatttatatggtatcaaattctactcattttcatttgaaaggatacataattgctttaataaaacactttaac |
10148582 |
T |
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| Q |
209 |
tcatcaagaaaattgatgtaaa |
230 |
Q |
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| T |
10148581 |
tcatcaagaaaattgatgtaaa |
10148560 |
T |
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Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 245 - 489
Target Start/End: Complemental strand, 10148574 - 10148324
Alignment:
| Q |
245 |
gaaaattgatgtaaatctcctaacttctccaatgaaatttcaattttatccatccattatttatgccaaagnnnnnnnnnnnnnctatatgatgcttctt |
344 |
Q |
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| T |
10148574 |
gaaaattgatgtaaatctcctaacttttccaatgaaatttcaattttatccatccattatttatgccaaagaaaaaagtaacaactatatgatgcttctt |
10148475 |
T |
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| Q |
345 |
tcccgtnnnnnnnn-----ctatatgctgcttcttattcatcannnnnnnnnnnnaactatatgatgcattgatgcttctttatat----acgtcagtct |
435 |
Q |
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| T |
10148474 |
tcccgtaaaaaaaaaaaaactatatgctgcttcttattcatcattttttttt---aactatatcatgcattgatgcttctttatatgtatacgtcagtct |
10148378 |
T |
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| Q |
436 |
tttggtgtgagtataatccttgtaatatttgccactcctctttggaataatatt |
489 |
Q |
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| T |
10148377 |
tttggtgtgagtataatccttgtaatatttgccactcctctttggaataatatt |
10148324 |
T |
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